Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021903
(532 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g19880.1 68414.m02493 regulator of chromosome condensation (R... 38 0.003
At3g26100.2 68416.m03250 regulator of chromosome condensation (R... 32 0.28
At3g26100.1 68416.m03251 regulator of chromosome condensation (R... 32 0.28
At3g19540.1 68416.m02477 expressed protein contains Pfam profile... 29 1.5
At5g44120.3 68418.m05400 12S seed storage protein (CRA1) nearly ... 27 6.0
At5g44120.2 68418.m05399 12S seed storage protein (CRA1) nearly ... 27 6.0
At5g44120.1 68418.m05398 12S seed storage protein (CRA1) nearly ... 27 6.0
At4g14410.1 68417.m02223 basic helix-loop-helix (bHLH) family pr... 27 6.0
At2g38830.1 68415.m04771 tumor susceptibility protein-related co... 27 6.0
At1g61010.2 68414.m06870 cleavage and polyadenylation specificit... 27 6.0
At1g61010.1 68414.m06869 cleavage and polyadenylation specificit... 27 6.0
At1g40390.1 68414.m04790 hypothetical protein 27 6.0
At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR... 27 7.9
At3g53830.1 68416.m05947 regulator of chromosome condensation (R... 27 7.9
At1g10110.1 68414.m01140 F-box family protein contains Pfam PF00... 27 7.9
>At1g19880.1 68414.m02493 regulator of chromosome condensation
(RCC1) family protein low similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 538
Score = 38.3 bits (85), Expect = 0.003
Identities = 20/72 (27%), Positives = 31/72 (43%)
Frame = +3
Query: 294 GVLMIAGLVSWDLTARRDNNPTKRTHPNLYTFHKFTDRRYRLIVSGCTAGHSVLVSEEGE 473
G L+ G +WD+ +R + + R + +GC + H V + EG
Sbjct: 20 GELLFCGATAWDIIGKR-KGAMEGNLVSPTRLRPLVGVNIRFVATGCASFHCVALDVEGR 78
Query: 474 AYTFCRNACGQL 509
YT+ RN GQL
Sbjct: 79 CYTWGRNEKGQL 90
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +3
Query: 408 RYRLIVSGCTAGHSVLVSEEGEAYTFCRNACGQL 509
+++++ + H+V+VS++G++ F N GQL
Sbjct: 109 KHKIVKAAAGRNHTVVVSDDGQSLGFGWNKYGQL 142
>At3g26100.2 68416.m03250 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 532
Score = 31.9 bits (69), Expect = 0.28
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +3
Query: 441 GHSVLVSEEGEAYTFCRNACGQL 509
GHSV V+ +GE YTF N GQL
Sbjct: 153 GHSVAVTSKGEVYTFGYNNSGQL 175
>At3g26100.1 68416.m03251 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 432
Score = 31.9 bits (69), Expect = 0.28
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +3
Query: 441 GHSVLVSEEGEAYTFCRNACGQL 509
GHSV V+ +GE YTF N GQL
Sbjct: 53 GHSVAVTSKGEVYTFGYNNSGQL 75
>At3g19540.1 68416.m02477 expressed protein contains Pfam profile
PF04788: Protein of unknown function (DUF620)
Length = 485
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 146 RNLWSLKMRIVMIQLLPIHQLNSQNLQHRSLKNVPLIT 259
RN L + ++ L PIH +S L H S+KN P+ T
Sbjct: 127 RNDLRLLLGVMGAPLAPIHVSSSDPLPHLSIKNTPIET 164
>At5g44120.3 68418.m05400 12S seed storage protein (CRA1) nearly
identical to SP|P15455 [Plant Mol Biol 11:805-820
(1988)]; contains Pfam profile PF00190 Cupin and Prosite
11-S plant seed storage proteins signature PS00305
Length = 472
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -1
Query: 169 HLQRPEVSSFLRPFHGY*NLAVDAYDLPLTCFIRLS*LK 53
+L P + +P GY + +++YDLP+ FIRLS L+
Sbjct: 296 NLDDPSRADVYKPQLGYIS-TLNSYDLPILRFIRLSALR 333
>At5g44120.2 68418.m05399 12S seed storage protein (CRA1) nearly
identical to SP|P15455 [Plant Mol Biol 11:805-820
(1988)]; contains Pfam profile PF00190 Cupin and Prosite
11-S plant seed storage proteins signature PS00305
Length = 368
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -1
Query: 169 HLQRPEVSSFLRPFHGY*NLAVDAYDLPLTCFIRLS*LK 53
+L P + +P GY + +++YDLP+ FIRLS L+
Sbjct: 192 NLDDPSRADVYKPQLGYIS-TLNSYDLPILRFIRLSALR 229
>At5g44120.1 68418.m05398 12S seed storage protein (CRA1) nearly
identical to SP|P15455 [Plant Mol Biol 11:805-820
(1988)]; contains Pfam profile PF00190 Cupin and Prosite
11-S plant seed storage proteins signature PS00305
Length = 285
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -1
Query: 169 HLQRPEVSSFLRPFHGY*NLAVDAYDLPLTCFIRLS*LK 53
+L P + +P GY + +++YDLP+ FIRLS L+
Sbjct: 109 NLDDPSRADVYKPQLGYIS-TLNSYDLPILRFIRLSALR 146
>At4g14410.1 68417.m02223 basic helix-loop-helix (bHLH) family
protein
Length = 283
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 272 EDFLQDSWCFDDSRSGVMGSYRQEG 346
+DF+ D +CFD S + Y Q G
Sbjct: 7 DDFVSDLFCFDQSNGAELDDYTQFG 31
>At2g38830.1 68415.m04771 tumor susceptibility protein-related
contains weak similarity to Swiss-Prot:Q99816 tumor
susceptibility gene 101 protein [Homo sapiens]
Length = 331
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 86 RQVVSVHCQVLVTVERSQEG-RNLWSLKMRI 175
R S+H VL +ERS+E NLW L+ +
Sbjct: 180 RLATSLHYDVLTIMERSEEEIENLWKLQSEV 210
>At1g61010.2 68414.m06870 cleavage and polyadenylation specificity
factor, putative similar to cleavage and polyadenylation
specificity factor 73 kDa subunit [Homo sapiens]
SWISS-PROT:Q9UKF6
Length = 693
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 281 LQDSWCFDDSRSGVMGSYRQEGQQSNQTYPPEPLYIS*VHRSSVPTYSQWVHCRTFS 451
L DSWC D + ++ Y EG + +T EP ++ ++ + P Q VH +FS
Sbjct: 350 LFDSWCSDKKNACIIPGYMVEGTLA-KTIINEPKEVTLMNGLTAPLNMQ-VHYISFS 404
>At1g61010.1 68414.m06869 cleavage and polyadenylation specificity
factor, putative similar to cleavage and polyadenylation
specificity factor 73 kDa subunit [Homo sapiens]
SWISS-PROT:Q9UKF6
Length = 693
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 281 LQDSWCFDDSRSGVMGSYRQEGQQSNQTYPPEPLYIS*VHRSSVPTYSQWVHCRTFS 451
L DSWC D + ++ Y EG + +T EP ++ ++ + P Q VH +FS
Sbjct: 350 LFDSWCSDKKNACIIPGYMVEGTLA-KTIINEPKEVTLMNGLTAPLNMQ-VHYISFS 404
>At1g40390.1 68414.m04790 hypothetical protein
Length = 426
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 502 PHALRQNV*ASPSSDTKTECPAVHPLTISRYRRS 401
P + R+N + D + ECP +H LTI+R S
Sbjct: 372 PRSSRRNHHFTSPLDHEVECPHLHHLTITRSNHS 405
>At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1188
Score = 27.1 bits (57), Expect = 7.9
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = -3
Query: 440 CSAPTDYKSVPTIGELM 390
C+ PTD+ ++P +GEL+
Sbjct: 818 CNLPTDFATLPNLGELL 834
>At3g53830.1 68416.m05947 regulator of chromosome condensation
(RCC1) family protein / UVB-resistance protein-related
contains Pfam PF00415 : Regulator of chromosome
condensation (RCC1); similar to UVB-resistance protein
UVR8 (GIi;10177674) [Arabidopsis thaliana]
Length = 487
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 444 HSVLVSEEGEAYTFCRNACGQLASET 521
H++ +S +G+ Y F N GQL + T
Sbjct: 373 HTICISSDGKVYAFGGNQFGQLGTGT 398
>At1g10110.1 68414.m01140 F-box family protein contains Pfam
PF00646: F-box domain; similar to F-box protein family,
AtFBX7 (GI:20197899) [Arabidopsis thaliana]
Length = 332
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 348 NNPTKRTHPNLYTFHKFTDRRYRLIVSGCTAGHSVL-VSEEGEAY 479
N TK P Y FH D R+R S G+SVL V E+ + Y
Sbjct: 60 NTGTKFERPGNYVFHLLFDDRHR--TSRAIVGNSVLWVDEKTKDY 102
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,761,027
Number of Sequences: 28952
Number of extensions: 250624
Number of successful extensions: 663
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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