Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021902
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce...    28   0.92 
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    27   1.6  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        26   3.7  
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    25   4.9  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   6.5  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    25   6.5  
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    25   8.6  

>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 367 LARNLNCSGFSFLTSCCITFLYNLI 293
           LA  ++C+ +SF  SC + F+ N I
Sbjct: 388 LADTVSCAAYSFAVSCALLFVMNYI 412


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 19/47 (40%), Positives = 21/47 (44%)
 Frame = -3

Query: 227 VFTT*SKSCFPVVVCWIANSSSASIVVTRTFICFPPATILIVMITHT 87
           V  T S SC P  V  +  S S S        C PP TILIV +  T
Sbjct: 162 VADTTSTSCNPATVLIVTTSGSTSTS------CPPPTTILIVTVPTT 202


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 496 ASNTEVSGGQYISSDKIAF 440
           ASNT V+G   +S DKI F
Sbjct: 109 ASNTSVAGSDSVSRDKIPF 127


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 174 ELEFRVHRRHADVHLFSSGNHFDSYDHT-HTADKITSTLCIIF 49
           E++ +V+   ADVH     NHF ++D + H        LC+ F
Sbjct: 263 EIQAKVNDASADVHEPFVYNHFRNFDASMHVNSTGLEDLCLTF 305


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 231 DRLYNLIEELLPGGRLLDRELEFRVHRRHADVHLFSS 121
           + LY+  + +L    LL R +  R  R+H  V++F S
Sbjct: 85  EALYSQYDGILHASLLLFRRVAIRHLRKHVPVYVFKS 121


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 58  TQSACDLIRCVCVII 102
           T   CD++RC+C+I+
Sbjct: 229 TTICCDIMRCLCLIV 243


>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 301 CIRR*CNKTSRKRIHCSSNSEPNSILRMSPMSSYRRS 411
           C +  CN   + R H + N   NS++   P+  +  S
Sbjct: 154 CAQEFCNSWLQSRAHKNQNQVTNSVVNEHPLIPHSTS 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,023,345
Number of Sequences: 5004
Number of extensions: 37812
Number of successful extensions: 114
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)