Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021902
         (508 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865...    30   0.93 
12_02_0189 + 15165485-15168694                                         27   6.5  
09_02_0104 - 4329068-4329926,4330967-4331811                           27   8.7  
08_02_1246 - 25559601-25560026,25560031-25560576                       27   8.7  
05_04_0022 - 17217626-17217643,17217740-17217856,17217987-172181...    27   8.7  
02_05_0825 - 32042128-32042238,32042905-32043246,32043548-32043727     27   8.7  
02_01_0164 + 1146093-1146119,1146682-1146955,1147309-1147684,114...    27   8.7  

>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
            30286718-30287042,30287563-30287818,30287901-30288117,
            30288743-30289095,30289330-30289833,30291267-30292467,
            30292614-30292970,30293258-30293495,30294083-30295125,
            30295234-30296649,30296731-30296855,30297036-30297314,
            30297352-30297382,30298957-30299022,30299447-30299689,
            30299848-30299898,30299980-30300071,30300182-30300249,
            30300515-30300600,30300720-30300824,30300994-30301127,
            30302403-30302436,30302620-30302892,30303019-30303288,
            30303384-30303974,30304065-30304214
          Length = 3376

 Score = 30.3 bits (65), Expect = 0.93
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -2

Query: 195  GGRLLDR-ELEFRVHRRHADVHLFSSGNHFDSYDHTHTADKITSTLCII 52
            GG  LDR E E ++H R    H  +   H   + H H  D   S++ I+
Sbjct: 2801 GGYDLDRIESEVQLHERKETGHCHAGEEHGHQHHHGHVHDSAVSSVSIV 2849


>12_02_0189 + 15165485-15168694
          Length = 1069

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 258  LQYTDSKGDLTWIKLYKKVMQQDVKKEN 341
            L+Y +SK +L+W K+ K+VM      EN
Sbjct: 918  LKYYESKLNLSWRKVLKEVMNNKESDEN 945


>09_02_0104 - 4329068-4329926,4330967-4331811
          Length = 567

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 345 LQFKFRAKFYPEDVADELIQEITLKLFYLQVKNAILSD 458
           L+ K   KF+PE  A   + E+ L L YL +   I  D
Sbjct: 267 LRQKQPGKFFPEQAAKFYVAEVLLALEYLHMLGIIYRD 304


>08_02_1246 - 25559601-25560026,25560031-25560576
          Length = 323

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 154 MDAELEFAIQQTTTGKQLFDQVVKTIGLREVWFLVF 261
           +DAE    +  T TG +  D V+ ++  RE W+  F
Sbjct: 7   LDAESNVVVAPTATGDEGADIVLASLPTREGWWTAF 42


>05_04_0022 -
           17217626-17217643,17217740-17217856,17217987-17218112,
           17218194-17218340,17218423-17218533,17218625-17218747,
           17218827-17218958,17219157-17219252,17219532-17219653,
           17219833-17220130,17220213-17220458,17220711-17220852,
           17221068-17222105,17222183-17222262,17222558-17222800,
           17222907-17222967,17224059-17224675
          Length = 1238

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 319 NKTSRKRIHCSSNSEPNSILRMSPMSSYRRSH 414
           N     R  CS+NS  NS+L ++   SY  S+
Sbjct: 370 NDLQSSRSQCSANSLSNSVLNINKADSYSTSN 401


>02_05_0825 - 32042128-32042238,32042905-32043246,32043548-32043727
          Length = 210

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 118 AGGKQMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTI 231
           AGG+   VR+  + A LE  ++   TG+QL +  V+ +
Sbjct: 139 AGGEHGPVRLVRLAAGLESDVRAVPTGEQLAEVAVQNV 176


>02_01_0164 +
           1146093-1146119,1146682-1146955,1147309-1147684,
           1149021-1149239,1149572-1149710,1149844-1150092,
           1150556-1150855
          Length = 527

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -2

Query: 216 LIEELLPGGRLLDRELEFRVHR 151
           L+EEL  GG LLD  L FR+ R
Sbjct: 71  LLEELAHGGDLLDATLAFRLMR 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,549,904
Number of Sequences: 37544
Number of extensions: 257509
Number of successful extensions: 666
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)