BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV021902 (508 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 30 0.93 12_02_0189 + 15165485-15168694 27 6.5 09_02_0104 - 4329068-4329926,4330967-4331811 27 8.7 08_02_1246 - 25559601-25560026,25560031-25560576 27 8.7 05_04_0022 - 17217626-17217643,17217740-17217856,17217987-172181... 27 8.7 02_05_0825 - 32042128-32042238,32042905-32043246,32043548-32043727 27 8.7 02_01_0164 + 1146093-1146119,1146682-1146955,1147309-1147684,114... 27 8.7 >04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512, 30286718-30287042,30287563-30287818,30287901-30288117, 30288743-30289095,30289330-30289833,30291267-30292467, 30292614-30292970,30293258-30293495,30294083-30295125, 30295234-30296649,30296731-30296855,30297036-30297314, 30297352-30297382,30298957-30299022,30299447-30299689, 30299848-30299898,30299980-30300071,30300182-30300249, 30300515-30300600,30300720-30300824,30300994-30301127, 30302403-30302436,30302620-30302892,30303019-30303288, 30303384-30303974,30304065-30304214 Length = 3376 Score = 30.3 bits (65), Expect = 0.93 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Frame = -2 Query: 195 GGRLLDR-ELEFRVHRRHADVHLFSSGNHFDSYDHTHTADKITSTLCII 52 GG LDR E E ++H R H + H + H H D S++ I+ Sbjct: 2801 GGYDLDRIESEVQLHERKETGHCHAGEEHGHQHHHGHVHDSAVSSVSIV 2849 >12_02_0189 + 15165485-15168694 Length = 1069 Score = 27.5 bits (58), Expect = 6.5 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +3 Query: 258 LQYTDSKGDLTWIKLYKKVMQQDVKKEN 341 L+Y +SK +L+W K+ K+VM EN Sbjct: 918 LKYYESKLNLSWRKVLKEVMNNKESDEN 945 >09_02_0104 - 4329068-4329926,4330967-4331811 Length = 567 Score = 27.1 bits (57), Expect = 8.7 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +3 Query: 345 LQFKFRAKFYPEDVADELIQEITLKLFYLQVKNAILSD 458 L+ K KF+PE A + E+ L L YL + I D Sbjct: 267 LRQKQPGKFFPEQAAKFYVAEVLLALEYLHMLGIIYRD 304 >08_02_1246 - 25559601-25560026,25560031-25560576 Length = 323 Score = 27.1 bits (57), Expect = 8.7 Identities = 12/36 (33%), Positives = 19/36 (52%) Frame = +1 Query: 154 MDAELEFAIQQTTTGKQLFDQVVKTIGLREVWFLVF 261 +DAE + T TG + D V+ ++ RE W+ F Sbjct: 7 LDAESNVVVAPTATGDEGADIVLASLPTREGWWTAF 42 >05_04_0022 - 17217626-17217643,17217740-17217856,17217987-17218112, 17218194-17218340,17218423-17218533,17218625-17218747, 17218827-17218958,17219157-17219252,17219532-17219653, 17219833-17220130,17220213-17220458,17220711-17220852, 17221068-17222105,17222183-17222262,17222558-17222800, 17222907-17222967,17224059-17224675 Length = 1238 Score = 27.1 bits (57), Expect = 8.7 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = +1 Query: 319 NKTSRKRIHCSSNSEPNSILRMSPMSSYRRSH 414 N R CS+NS NS+L ++ SY S+ Sbjct: 370 NDLQSSRSQCSANSLSNSVLNINKADSYSTSN 401 >02_05_0825 - 32042128-32042238,32042905-32043246,32043548-32043727 Length = 210 Score = 27.1 bits (57), Expect = 8.7 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = +1 Query: 118 AGGKQMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTI 231 AGG+ VR+ + A LE ++ TG+QL + V+ + Sbjct: 139 AGGEHGPVRLVRLAAGLESDVRAVPTGEQLAEVAVQNV 176 >02_01_0164 + 1146093-1146119,1146682-1146955,1147309-1147684, 1149021-1149239,1149572-1149710,1149844-1150092, 1150556-1150855 Length = 527 Score = 27.1 bits (57), Expect = 8.7 Identities = 13/22 (59%), Positives = 15/22 (68%) Frame = -2 Query: 216 LIEELLPGGRLLDRELEFRVHR 151 L+EEL GG LLD L FR+ R Sbjct: 71 LLEELAHGGDLLDATLAFRLMR 92 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,549,904 Number of Sequences: 37544 Number of extensions: 257509 Number of successful extensions: 666 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 660 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 665 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 1083123860 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -