Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021902
         (508 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45073| Best HMM Match : ERM (HMM E-Value=0)                        109   1e-24
SB_24261| Best HMM Match : Band_41 (HMM E-Value=3.4e-09)              108   3e-24
SB_39972| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   3e-07
SB_5728| Best HMM Match : Band_41 (HMM E-Value=1e-26)                  48   4e-06
SB_30953| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   7e-05
SB_26502| Best HMM Match : Band_41 (HMM E-Value=1.4e-16)               43   1e-04
SB_18809| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.011
SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)               34   0.059
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.24 
SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)                      30   1.3  
SB_26457| Best HMM Match : Band_41 (HMM E-Value=0.0026)                29   2.2  
SB_35524| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_59005| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_48108| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_37101| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_948| Best HMM Match : Sec62 (HMM E-Value=9.5)                       27   8.9  

>SB_45073| Best HMM Match : ERM (HMM E-Value=0)
          Length = 504

 Score =  109 bits (263), Expect = 1e-24
 Identities = 47/66 (71%), Positives = 58/66 (87%)
 Frame = +3

Query: 306 KKVMQQDVKKENPLQFKFRAKFYPEDVADELIQEITLKLFYLQVKNAILSDEIYCPPETS 485
           K VM QDVKKE PLQFKFR KF+PEDVA+ELIQE+T K+F+LQ+K AI + +++CPPET+
Sbjct: 3   KAVMSQDVKKETPLQFKFRVKFFPEDVAEELIQEVTQKMFFLQIKEAIFTSDVFCPPETT 62

Query: 486 VLLASY 503
           VLLASY
Sbjct: 63  VLLASY 68


>SB_24261| Best HMM Match : Band_41 (HMM E-Value=3.4e-09)
          Length = 118

 Score =  108 bits (259), Expect = 3e-24
 Identities = 46/64 (71%), Positives = 57/64 (89%)
 Frame = +3

Query: 312 VMQQDVKKENPLQFKFRAKFYPEDVADELIQEITLKLFYLQVKNAILSDEIYCPPETSVL 491
           VM QDVKKE PLQFKFR KF+PEDVA+ELIQE+T K+F+LQ+K AI + +++CPPET+VL
Sbjct: 1   VMSQDVKKETPLQFKFRVKFFPEDVAEELIQEVTQKMFFLQIKEAIFTSDVFCPPETTVL 60

Query: 492 LASY 503
           LASY
Sbjct: 61  LASY 64


>SB_39972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
 Frame = +3

Query: 255 GLQYTDSK-GDLTWIKLYKKVMQQDVKKENPLQFKFRAKFYPEDVADELIQEITLKLFYL 431
           GL+Y D K G   W++  + + +Q  K   PL F F  KFYPE+    L ++IT   F L
Sbjct: 50  GLRYIDEKDGQFNWLEGDRSIKRQMGKA--PLHFYFAVKFYPENPTT-LREDITRYQFVL 106

Query: 432 QVKNAILSDEIYCPPETSVLLASY 503
           Q++  +L   I C      LLASY
Sbjct: 107 QLREDLLKGRIQCSNPIHALLASY 130



 Score = 35.1 bits (77), Expect = 0.034
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +1

Query: 139 VRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLRE 243
           V+V  +D++ E  I +TT G  LFDQV   IGL E
Sbjct: 11  VQVAGLDSDYECPIDKTTKGDHLFDQVCDHIGLAE 45


>SB_5728| Best HMM Match : Band_41 (HMM E-Value=1e-26)
          Length = 906

 Score = 48.0 bits (109), Expect = 4e-06
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
 Frame = +3

Query: 255 GLQYTDSKGDLTWIKLYKKVMQQ---DVKKENPLQFKFRAKFYPEDVADELIQEITLKLF 425
           GLQY   KGD  W+ L K V +Q     +    +  KFR K++  + A  L +EI   L+
Sbjct: 626 GLQYR-KKGDDWWLDLAKPVAKQLSNHGRIAAVVTLKFRVKYFVCN-AYSLQEEIARYLY 683

Query: 426 YLQVKNAILSDEIYCPPETSVLLASY 503
           YLQ+K  +L+  + C  + +V+LASY
Sbjct: 684 YLQLKKNVLAGLLLCDEQAAVVLASY 709


>SB_30953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 44.0 bits (99), Expect = 7e-05
 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
 Frame = +3

Query: 249 VLGLQYTD-SKGDLTWIKLYKKVMQQDVKKENPLQFKFRAKFYPEDVADELIQEITLKLF 425
           + GLQYT    G L W+ + K++  Q   +  P  F+F  KFYP +  +  +  ++ +L 
Sbjct: 67  IFGLQYTSWEDGALNWLDMSKEIRSQ---RSKPYHFQFAVKFYPRNPRE--LDPVSRELM 121

Query: 426 YLQVKNAILSDEIYCP 473
            LQVK++++  +   P
Sbjct: 122 CLQVKDSLVRGKFLKP 137


>SB_26502| Best HMM Match : Band_41 (HMM E-Value=1.4e-16)
          Length = 573

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 22/50 (44%), Positives = 33/50 (66%)
 Frame = +3

Query: 357 FRAKFYPEDVADELIQEITLKLFYLQVKNAILSDEIYCPPETSVLLASYA 506
           FR K+Y E++   L Q+ T  L+YLQ++  +L   I+   ET++LLASYA
Sbjct: 297 FRVKYYVENIC-LLQQQSTRHLYYLQLRKDVLEGGIFVHEETAMLLASYA 345



 Score = 27.5 bits (58), Expect = 6.7
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +1

Query: 70  CDLIRCVCVIITIKMVAGGKQMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVW 249
           C  I  +   IT  +  G K +NV V      L   +  T TG+ L++ +   +GL E  
Sbjct: 96  CHSIMLLLSYITTHIGDGDKLINV-VLLNGERLNVRVLSTATGQDLYNTISDHLGLSETI 154

Query: 250 F 252
           F
Sbjct: 155 F 155


>SB_18809| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 69

 Score = 36.7 bits (81), Expect = 0.011
 Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = +1

Query: 181 QQTTTGKQLFDQVVKTIGLREVWF--LVFSTPT 273
           +Q+  G +LFD VV+T+G+RE W+  L F  PT
Sbjct: 26  KQSAKGSELFDLVVRTLGVRETWYFGLQFEYPT 58


>SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)
          Length = 378

 Score = 34.3 bits (75), Expect = 0.059
 Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
 Frame = +3

Query: 255 GLQYTD-SKGDLTWIKLYKKVMQQDVKKENPLQFKFRAKFYPEDVADELIQEITLKLFYL 431
           GLQY D + G+  W++L+K +  Q  +K+  L  +F  + +P  +    ++ I  +   L
Sbjct: 65  GLQYVDRNDGETNWLELHKPIYGQ--QKDKTLSVQFVVRVFP--LNPLRMEPIVQRWILL 120

Query: 432 QVKNAILSDEIYCPPETSVLLASY 503
           Q+K+ +   ++    +   LL SY
Sbjct: 121 QMKDLLSRGKVKVSLQKHALLDSY 144


>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2437

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 15/57 (26%), Positives = 31/57 (54%)
 Frame = +1

Query: 124 GKQMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVWFLVFSTPTPRATSLG 294
           G++M   +     +L+  I+  TT +QL++QV+K IG+ +  F   +    +  ++G
Sbjct: 278 GRRMVSVIVLNGQKLQMMIETNTTTQQLYEQVIKYIGIPDKIFFGLAQQKAQGNAIG 334


>SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)
          Length = 1595

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 165  FRVHRRHADVHLFSSGNHFDSYDHTHTADKITSTLCIIFLKGGSLKP 25
            F V     DVHL  +G+  +      + D+  ST+C +   G S+ P
Sbjct: 935  FTVCESKFDVHLMCAGSSDNFVPKLPSCDRFVSTICCVSASGTSMPP 981


>SB_26457| Best HMM Match : Band_41 (HMM E-Value=0.0026)
          Length = 453

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 255 GLQYTDS-KGDLTWIKLYKKVMQQDVKKENPLQFKFRAK 368
           GL Y +   G  TW++L K+V+  ++ + +PL   F  +
Sbjct: 50  GLSYAEEGSGAQTWLRLDKRVLDHELPRHDPLILLFAVR 88


>SB_35524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 243 GVVLGLQYTDSKGDLTWIKLYKKVMQQDVKKENP 344
           G V   +Y++ K D TW  +Y+K + + V ++ P
Sbjct: 22  GSVYARKYSEFKDDQTWTSMYEKNLGRKVSEQPP 55


>SB_59005| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 917

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 204 TLRSSCKDDRPPRGVVLGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQ 350
           T +S  K +    G +      DSKGD T IK+  K  +++  + +PLQ
Sbjct: 656 TPKSDRKSNNNSSGFIRSYSMKDSKGDFTPIKV-AKPQEREFIRNSPLQ 703


>SB_48108| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 74

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 121 GGKQMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIG 234
           GGK  N RVT+  +E E  +QQ  +     +  +KT G
Sbjct: 26  GGKPGNTRVTSSKSEFEKLVQQLESATVRIESRLKTPG 63


>SB_37101| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = +3

Query: 258 LQYTDSKGDLTWIKLYKKVMQQDVKK-ENPLQFKFRAKFYPEDVADELIQEITLKLFYLQ 434
           +Q+ D+     ++ +   ++++ V K EN +++KF +K    D AD++    + K  ++Q
Sbjct: 2   VQHKDNMSGFMFLLVMDWILRRSVGKGENGIRWKFTSKLDDLDFADDIALLSSTK-HHIQ 60

Query: 435 VKNAILSDE 461
            K A L  E
Sbjct: 61  EKTARLDGE 69


>SB_948| Best HMM Match : Sec62 (HMM E-Value=9.5)
          Length = 306

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 183 ADDHREATLRSSCKDDRPPRGVVLGLQYTDSKGD-LTWIKLYKKVMQQD 326
           A+D+RE+  +S    DRP    V G  Y  SKG  +   KL+ K  ++D
Sbjct: 75  ANDNRESNFKSFISVDRPAN--VTGEGYFRSKGSVIAKFKLFFKTEKKD 121


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,425,675
Number of Sequences: 59808
Number of extensions: 291105
Number of successful extensions: 975
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)