Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021902
(508 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g28570.1 68418.m03485 hypothetical protein 31 0.59
At5g56560.1 68418.m07058 F-box family protein contains F-box dom... 29 1.4
At5g55430.1 68418.m06905 hypothetical protein 29 1.4
At5g10440.1 68418.m01210 cyclin family protein similar to cyclin... 29 1.4
At4g01560.1 68417.m00202 brix domain-containing protein contains... 29 1.4
At5g50060.1 68418.m06199 invertase/pectin methylesterase inhibit... 28 4.2
At5g01460.1 68418.m00059 LMBR1 integral membrane family protein ... 27 5.5
At4g24240.1 68417.m03479 WRKY family transcription factor contai... 27 5.5
At3g08930.2 68416.m01039 LMBR1 integral membrane family protein ... 27 5.5
At3g08930.1 68416.m01040 LMBR1 integral membrane family protein ... 27 5.5
At1g75340.1 68414.m08751 zinc finger (CCCH-type) family protein ... 27 5.5
At1g32170.1 68414.m03957 xyloglucan:xyloglucosyl transferase, pu... 27 5.5
At1g72120.1 68414.m08336 proton-dependent oligopeptide transport... 27 9.6
>At5g28570.1 68418.m03485 hypothetical protein
Length = 156
Score = 30.7 bits (66), Expect = 0.59
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = -2
Query: 306 YTT*SK*--GRPWSRCTEDQEPHLAE--ADRLYNLIEELLPGGRLLDREL 169
YT+ SK GRP+ RC Q+ HL + D +Y + + LP ++D E+
Sbjct: 35 YTSASKTNPGRPFFRCPTKQDDHLFKWVEDGVYEKVADALPKFSIIDSEI 84
>At5g56560.1 68418.m07058 F-box family protein contains F-box domain
Pfam:PF00646
Length = 607
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +1
Query: 88 VCVIITIKMVAGGKQMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGL 237
+C ++ +V G K +NV++ MD ++ +TG+ + + KT+GL
Sbjct: 175 ICPVLERLVVDGTKGVNVKIPNMDVPNLRSLSFRSTGELRIELLRKTLGL 224
>At5g55430.1 68418.m06905 hypothetical protein
Length = 149
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = -2
Query: 261 EDQEPHLAEADRLYNLIEELLPGGRLLDRELEFRVHRRHADVHLFSSGNHFDSYDHTHTA 82
ED+E + ++Y + GG L+DR+ E ++ D F G H D D+ ++
Sbjct: 41 EDEEGEWSLKKKVYVAFPKSFGGGFLVDRKKETKIST--VDKSSFGQGTHMDYVDYGTSS 98
Query: 81 DK 76
K
Sbjct: 99 GK 100
>At5g10440.1 68418.m01210 cyclin family protein similar to cyclin
D2.1 protein [Nicotiana tabacum] GI:4160298; contains
Pfam profile PF00134: Cyclin, N-terminal domain
Length = 298
Score = 29.5 bits (63), Expect = 1.4
Identities = 21/53 (39%), Positives = 24/53 (45%)
Frame = -2
Query: 258 DQEPHLAEADRLYNLIEELLPGGRLLDRELEFRVHRRHADVHLFSSGNHFDSY 100
DQEPH R +I G +D LEFR A V L SG HFD +
Sbjct: 188 DQEPHSRLVTRSLQVIASTTKG---IDF-LEFRASEIAAAVALSVSGEHFDKF 236
>At4g01560.1 68417.m00202 brix domain-containing protein contains
Pfam domain, PF04427: Brix domain
Length = 343
Score = 29.5 bits (63), Expect = 1.4
Identities = 22/67 (32%), Positives = 31/67 (46%)
Frame = +3
Query: 297 KLYKKVMQQDVKKENPLQFKFRAKFYPEDVADELIQEITLKLFYLQVKNAILSDEIYCPP 476
K K +Q +K+ Q K RA+ E A EL +E K+ ++N SDE C P
Sbjct: 44 KRSKVYAKQKHEKKLEKQKKIRARDAAEKRALELGEEPPQKMIPKTIENTRESDETVCRP 103
Query: 477 ETSVLLA 497
+ L A
Sbjct: 104 DDEELFA 110
>At5g50060.1 68418.m06199 invertase/pectin methylesterase inhibitor
family protein low similarity to pollen-specific protein
Bnm1 [Brassica napus] GI:1857671; contains Pfam profile
PF04043: Plant invertase/pectin methylesterase inhibitor
Length = 166
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 73 DLIRCVCVIITIKMVAGGKQMNVRVTTMDAELE 171
D+ RC + + +K V GG + N T MD L+
Sbjct: 117 DIFRCTDITMYLKDVVGGNRDNTSKTFMDMTLQ 149
>At5g01460.1 68418.m00059 LMBR1 integral membrane family protein
contains Pfam PF04791: LMBR1-like conserved region
Length = 509
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -2
Query: 285 GRPWSRCTEDQEPHLAEADRLYNLIEELLPGGRLLDRELEFRV 157
GR W + + E L + + NL+EE+ P G + F V
Sbjct: 283 GRKWRKNVKAVEKELLQLEEDVNLLEEMYPQGEQAETAWAFTV 325
>At4g24240.1 68417.m03479 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain
Length = 353
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +1
Query: 289 LGSSCIRR*CNKTSRKRIHCSS--NSEPNSILRMSPMSS 399
L S+ ++R CN + R HCS S ++R+ +SS
Sbjct: 236 LSSASLKRRCNSSPSSRCHCSKKRKSRVKRVIRVPAVSS 274
>At3g08930.2 68416.m01039 LMBR1 integral membrane family protein
contains 5 transmembrane domains; contains Pfam PF04791:
LMBR1-like conserved region; similar to unknown protein
GB:BAA83351 [Oryza sativa]
Length = 526
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -2
Query: 285 GRPWSRCTEDQEPHLAEADRLYNLIEELLPGGRLLDRELEFRV 157
GR W + + E L + + NL+EE+ P G + F V
Sbjct: 300 GRKWRKNVKAVEKELLQLEEDVNLLEEMYPQGEQAETAWAFTV 342
>At3g08930.1 68416.m01040 LMBR1 integral membrane family protein
contains 5 transmembrane domains; contains Pfam PF04791:
LMBR1-like conserved region; similar to unknown protein
GB:BAA83351 [Oryza sativa]
Length = 310
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -2
Query: 285 GRPWSRCTEDQEPHLAEADRLYNLIEELLPGGRLLDRELEFRV 157
GR W + + E L + + NL+EE+ P G + F V
Sbjct: 84 GRKWRKNVKAVEKELLQLEEDVNLLEEMYPQGEQAETAWAFTV 126
>At1g75340.1 68414.m08751 zinc finger (CCCH-type) family protein
weak similarity to Nucleoporin NUP42 (Nuclear pore
protein NUP42) (Swiss-Prot:P49686) [Saccharomyces
cerevisiae]; contains Pfam profile PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 435
Score = 27.5 bits (58), Expect = 5.5
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +3
Query: 306 KKVMQQDVKKENPLQFKFRA----KFYPEDVADELIQEITLKLFYLQVKNAI 449
K+VMQ D K E P+ +K K++P DV ++ E + Y + K I
Sbjct: 112 KRVMQDDFKNERPM-WKLTCYGHWKYFPCDVTGDISYEELRAVAYEEAKRGI 162
>At1g32170.1 68414.m03957 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative (XTR4) identical
to N-terminal partial sequence of xyloglucan
endotransglycosylase-related protein XTR4 GI:1244754
from [Arabidopsis thaliana]; similar to endoxyloglucan
transferase [Arabidopsis thaliana] GI:5533311
Length = 343
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -1
Query: 508 TAYEASNTEVSGGQYISSDKIAFFTCR*KSFNV 410
T ++AS+ SGG+Y ++ K A F KSF++
Sbjct: 197 TIWDASDWATSGGKYKANYKFAPFVAEFKSFSL 229
>At1g72120.1 68414.m08336 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 1095
Score = 26.6 bits (56), Expect = 9.6
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +1
Query: 91 CVIITIKMVAGGKQMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVWFLV 258
C I T+K + G ++ + A +EF +T L DQ T+ + +W+L+
Sbjct: 393 CGITTLKRIGTGIVLSTITMVIAALVEFKRLETAKEHGLIDQPEATLPM-SIWWLI 447
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,706,967
Number of Sequences: 28952
Number of extensions: 202837
Number of successful extensions: 611
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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