Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021901
         (606 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000E48997 Cluster: PREDICTED: similar to reverse tr...    46   7e-04
UniRef50_UPI0000E4958A Cluster: PREDICTED: similar to endonuclea...    43   0.006
UniRef50_UPI0000E490F6 Cluster: PREDICTED: similar to endonuclea...    42   0.009
UniRef50_UPI0000E4898C Cluster: PREDICTED: similar to fibropelli...    37   0.32 
UniRef50_UPI0000E48520 Cluster: PREDICTED: similar to endonuclea...    37   0.32 
UniRef50_Q09594 Cluster: Putative uncharacterized protein; n=1; ...    37   0.43 

>UniRef50_UPI0000E48997 Cluster: PREDICTED: similar to reverse
           transcriptase-like; n=6; Strongylocentrotus
           purpuratus|Rep: PREDICTED: similar to reverse
           transcriptase-like - Strongylocentrotus purpuratus
          Length = 415

 Score = 46.0 bits (104), Expect = 7e-04
 Identities = 22/42 (52%), Positives = 24/42 (57%)
 Frame = +1

Query: 1   VEGKRPRGRSPKRWSDQISEQTSGPLSAALHQATDRNRWRLT 126
           VEGKR RGR  K+W D I E T    + A   A DRN WR T
Sbjct: 355 VEGKRKRGRQRKQWFDNIKEWTGLTYTEAKRLAQDRNNWRKT 396


>UniRef50_UPI0000E4958A Cluster: PREDICTED: similar to
           endonuclease-reverse transcriptase, partial; n=7;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           endonuclease-reverse transcriptase, partial -
           Strongylocentrotus purpuratus
          Length = 787

 Score = 42.7 bits (96), Expect = 0.006
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +1

Query: 7   GKRPRGRSPKRWSDQISEQTSGPLSAALHQATDRNRWRL 123
           G+RPRGR PKRW DQ+          A  +A DR+ W +
Sbjct: 472 GRRPRGRPPKRWKDQVQYDVGLSTQEAEQRAQDRSDWNM 510


>UniRef50_UPI0000E490F6 Cluster: PREDICTED: similar to
            endonuclease-reverse transcriptase; n=5;
            Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
            endonuclease-reverse transcriptase - Strongylocentrotus
            purpuratus
          Length = 1030

 Score = 42.3 bits (95), Expect = 0.009
 Identities = 25/57 (43%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = +1

Query: 1    VEGKRPRGRSPKRWSDQISEQTSG----PLSAALHQATDRNRWR-LTVDKLKRSHDP 156
            V G RPRGR PKRW D ISE         L+ A   A DR  W  +T+ K  R   P
Sbjct: 970  VTGNRPRGRPPKRWLDCISEDCKARSIPRLTDASRLAADRKTWHTITIQKPSRGPRP 1026


>UniRef50_UPI0000E4898C Cluster: PREDICTED: similar to fibropellin
           Ia; n=2; Strongylocentrotus purpuratus|Rep: PREDICTED:
           similar to fibropellin Ia - Strongylocentrotus
           purpuratus
          Length = 1096

 Score = 37.1 bits (82), Expect = 0.32
 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
 Frame = +1

Query: 1   VEGKRPRGRSPKRWSDQISEQTSGPLSAALHQAT----DRNRWRLTVDKLKRSH 150
           V GK PRGR  KRW+D I    +     +L +AT    DR  WR T+ K K S+
Sbjct: 22  VHGKHPRGRPAKRWTDCIKADCNNRQVDSLTKATRLTEDRKVWR-TIVKQKPSY 74


>UniRef50_UPI0000E48520 Cluster: PREDICTED: similar to
            endonuclease-reverse transcriptase; n=2;
            Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
            endonuclease-reverse transcriptase - Strongylocentrotus
            purpuratus
          Length = 958

 Score = 37.1 bits (82), Expect = 0.32
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +1

Query: 1    VEGKRPRGRSPKRWSDQISEQTSGPLSAALHQAT----DRNRWRLTVDKLKRSHDP 156
            + GKRPRGR  KRW+D I          +L +AT    DR  W+  V K K S+ P
Sbjct: 883  IHGKRPRGRPAKRWTDCIKADCKNRQVDSLTKATRLTEDRKVWQAIV-KQKPSYIP 937


>UniRef50_Q09594 Cluster: Putative uncharacterized protein; n=1;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 542

 Score = 36.7 bits (81), Expect = 0.43
 Identities = 22/72 (30%), Positives = 35/72 (48%)
 Frame = +1

Query: 1   VEGKRPRGRSPKRWSDQISEQTSGPLSAALHQATDRNRWRLTVDKLKRSHDPQQLGSDGE 180
           ++G  PR RSP R     S  +S  +S++LH    R R R    + +     QQL    E
Sbjct: 12  IDGAAPRSRSPHRRQPHHSRSSSNNISSSLHSRLRRRR-RSRSQRKQLQWQQQQLRLRKE 70

Query: 181 EESKTRRVLK*C 216
           +++++RR    C
Sbjct: 71  QQNQSRRRTSSC 82


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 526,598,938
Number of Sequences: 1657284
Number of extensions: 9839440
Number of successful extensions: 24640
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24632
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43147568152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)