Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021901
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr ...    29   0.70 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   4.9  
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    25   8.6  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   8.6  

>SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 324

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = -3

Query: 355 AKYTLFGLPDWNERMFSENIKTHLTSK 275
           A Y LFGL  WN     ENI  HLT+K
Sbjct: 84  AAYRLFGLEHWN-----ENILNHLTAK 105


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 325  WNERMFSENIKTHLTSKSN*KGGKIETMSLSYIHLYS 215
            W  ++  ++I  HL  K N KG +     +SY+H Y+
Sbjct: 1456 WAFQLIMDDIN-HLLRKENPKGSQSMLKFISYLHRYN 1491


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 145 SHDPQQLGSDGEEESKTRRVLK*CYIDVCSLETSSLF 255
           S DP+       EE + R  L  C ID+CS +  +LF
Sbjct: 200 SMDPEIFNE--HEELEVRNDLIDCQIDICSNDVPALF 234


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 226  VCSLETSSLFFLPFNSTYSSNAF*CSLKT 312
            VC L + SLF L  N TYS   F  +LK+
Sbjct: 2873 VCWLNSFSLFELQKNQTYSIEDFEDNLKS 2901


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,260,342
Number of Sequences: 5004
Number of extensions: 43270
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)