Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021901
         (606 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0090 - 5564326-5567280                                           32   0.41 
05_02_0115 - 6758540-6758771,6759417-6759524,6759670-6759840,675...    29   3.8  
11_01_0398 - 3008074-3008428,3009775-3009926,3010070-3011368           28   6.6  
08_01_1047 - 10616113-10616669,10616727-10616953,10617564-106176...    28   6.6  
07_03_0300 - 16401011-16401435,16401692-16401743                       28   6.6  
06_03_1497 + 30585074-30586327                                         27   8.7  

>03_02_0090 - 5564326-5567280
          Length = 984

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +1

Query: 76  LSAALHQATDRNRWRLTVDKLKRSHDPQQLGSDGEEESKTRRVLK*CY 219
           +  AL   TD   WR  +DKL+ +H  +  G + EE +   RVLK  Y
Sbjct: 384 IGKALSTKTDPELWRHAIDKLRNAHLHEITGME-EENAGMLRVLKVSY 430


>05_02_0115 -
           6758540-6758771,6759417-6759524,6759670-6759840,
           6759967-6760077,6760562-6760663,6761139-6761366,
           6761568-6761696,6761753-6761869,6761955-6762301,
           6762377-6762931,6763104-6763182,6763429-6763595,
           6763857-6764075,6764956-6765139,6765175-6765371,
           6765717-6766035,6766379-6766538,6767642-6767794,
           6767911-6768013
          Length = 1226

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +1

Query: 70  GPLSAALHQATDR---NRWRLTVDKLKRSHDPQQLGSDG 177
           GP++A L++       +RWR   D LK +HD + L + G
Sbjct: 401 GPVAATLNEGMFNLVISRWREAYDSLKETHDYKTLSAAG 439


>11_01_0398 - 3008074-3008428,3009775-3009926,3010070-3011368
          Length = 601

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -3

Query: 148 DSVLACRLSASIGSGQLPGVVQR*VVRWFARRSGRTNVWGS 26
           D VL CR S S  +     +++R V+++ AR+SG  N  GS
Sbjct: 86  DIVLLCRDSTSNTAAGSGKIIERWVIQYEARKSGGGNGNGS 126


>08_01_1047 -
           10616113-10616669,10616727-10616953,10617564-10617649,
           10617949-10618080,10618867-10618959
          Length = 364

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = -3

Query: 361 EKAKYTLFGLPDWNERM-FSENIKTHLTSKSN*KGGKIETMSLSYIHLYSIILKPF*FWI 185
           E + YTLF L +W +++  S ++ + L  K N +G  I +  L+    Y ++      W 
Sbjct: 70  ENSPYTLFQLKEWTKKVHISISMSSMLEPKDNMQGRVISSGHLAGWDTYLLMTDDQIHWF 129

Query: 184 LLLHRSLI 161
            +++  +I
Sbjct: 130 SIVNSLMI 137


>07_03_0300 - 16401011-16401435,16401692-16401743
          Length = 158

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +1

Query: 4   EGKRPRGRSPKRWSDQISEQT--SGPLSAALHQATDRNRWR 120
           +G  PR + P++      +QT    P   ALHQ   R RWR
Sbjct: 61  DGLLPRFQGPEQPDPLAGDQTIDGPPTDLALHQEGRRRRWR 101


>06_03_1497 + 30585074-30586327
          Length = 417

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 23/80 (28%), Positives = 35/80 (43%)
 Frame = +1

Query: 49  QISEQTSGPLSAALHQATDRNRWRLTVDKLKRSHDPQQLGSDGEEESKTRRVLK*CYIDV 228
           Q S   +  + + L +  D  RW   VD +  + DP+         S+ RR L+   I  
Sbjct: 139 QSSMDVTSAVWSELSRFRDTGRWEEAVDLVANAGDPKARDLSVNNWSRLRRSLE---IIR 195

Query: 229 CSLETSSLFFLPFNSTYSSN 288
            S    S F LP+N+ Y+ N
Sbjct: 196 SSGSPPSAFSLPYNA-YNLN 214


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,438,845
Number of Sequences: 37544
Number of extensions: 248881
Number of successful extensions: 580
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)