Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021901
(606 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22184| Best HMM Match : PHD (HMM E-Value=0.00011) 34 0.078
SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.96
SB_22340| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.96
SB_48322| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_6981| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_10747| Best HMM Match : Carb_kinase (HMM E-Value=0.044) 29 2.9
SB_29424| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42) 28 5.1
SB_45953| Best HMM Match : LRR_1 (HMM E-Value=7.4e-15) 28 6.7
SB_41786| Best HMM Match : AT_hook (HMM E-Value=0.24) 27 8.9
SB_13837| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_9819| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
>SB_22184| Best HMM Match : PHD (HMM E-Value=0.00011)
Length = 634
Score = 34.3 bits (75), Expect = 0.078
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 1 VEGKRPRGRSPKRWSDQISEQTSGPLSAALHQATDRNRWRLTVD 132
+EGKR RGR K W + + E H DR RW+L ++
Sbjct: 581 IEGKRTRGRPRKNWHEVLREDLK-LAGLTPHDTQDRVRWKLKLN 623
>SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 737
Score = 30.7 bits (66), Expect = 0.96
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 79 SAALHQATDRNRWRLTVDKLKRSHDPQQLGSDGEEESK 192
S + H++ DR R R + D +R H PQ+ GSD +S+
Sbjct: 264 SGSKHRSKDRTR-RDSGDSHERQHRPQRSGSDASNDSR 300
>SB_22340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 30.7 bits (66), Expect = 0.96
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +1
Query: 7 GKRPRGRSPKRWSDQISEQTSG---PLSAALHQATDRNRWRLTVDKLKRSHDPQ 159
G+R GR W I + SG L+ A H A DR +W+ V L + D +
Sbjct: 72 GRRKPGRPKTTWRRTILSELSGHQLTLAEAQHMARDRRKWKRFVAALCPTGDEE 125
>SB_48322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 169
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +1
Query: 7 GKRPRGRSPKRWSDQISEQTSG---PLSAALHQATDRNRWRLTVDKLKRSHDPQQL 165
G+R GR W I + S L+ A H+A DR +W+ V L D +Q+
Sbjct: 17 GRRKPGRPKTTWRRTILSELSKHQLTLAEAQHKARDRRKWKRFVAALCPDGDEEQV 72
>SB_6981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 71
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +1
Query: 7 GKRPRGRSPKRWSDQISEQTSG---PLSAALHQATDRNRWRLTVDKLKRSHDPQQ 162
G+R GR W I + S L+ A H+A DR +W+ V L D +Q
Sbjct: 17 GRRKPGRPKTTWRRTILSELSKHQLTLAEAQHKARDRRKWKRFVAALCPDGDEEQ 71
>SB_10747| Best HMM Match : Carb_kinase (HMM E-Value=0.044)
Length = 185
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +1
Query: 49 QISEQTSGPLSAALHQATDRNRW--RLTVDKLKRS 147
QISE T P A + A+ RW RL +LKRS
Sbjct: 130 QISEVTQNPTLVAAYAASGLTRWCNRLAYSRLKRS 164
>SB_29424| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42)
Length = 712
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/36 (50%), Positives = 19/36 (52%)
Frame = -3
Query: 148 DSVLACRLSASIGSGQLPGVVQR*VVRWFARRSGRT 41
DS A LS + G L VV V WFARRS RT
Sbjct: 81 DSKSAVGLSVAFGIVLLFAVVGNAFVIWFARRSTRT 116
>SB_45953| Best HMM Match : LRR_1 (HMM E-Value=7.4e-15)
Length = 1427
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 493 KPKRKRKTKLRSFDIIYEKNTGDTKSLRIITQFRIFL 383
K +++ K KLRS+ + TG+ + L + T F +FL
Sbjct: 1278 KIRKREKLKLRSWKNAIKLRTGNNRVLYLQTYFHLFL 1314
>SB_41786| Best HMM Match : AT_hook (HMM E-Value=0.24)
Length = 324
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 10 KRPRGRSPKRWSDQ-ISEQTSGPLSAALHQATDRNRWRLTVDKLKRSHDPQQLGSDGEE 183
KRPRGR K+W Q + + P+ +A + R + K K+ P++ S+ +E
Sbjct: 50 KRPRGRPSKKWQAQFLGKVFPEPVKSAKKERKPRE--KKEKPKEKQEKKPKKASSEKKE 106
>SB_13837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 72
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Frame = +1
Query: 7 GKRPRGRSPKRWSDQISEQTSG---PLSAALHQATDRNRWRLTVDKLKRSHDPQ 159
G+R GR W I + S L+ A H A DR +W+ V L + D +
Sbjct: 17 GRRKPGRPKTTWRRTILSELSEHQLTLAEAQHMARDRRKWKRFVAALCPTGDEE 70
>SB_9819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Frame = +1
Query: 7 GKRPRGRSPKRWSDQISEQTSG---PLSAALHQATDRNRWRLTVDKLKRSHDPQ 159
G+R GR W I + S L+ A H A DR +W+ V L + D +
Sbjct: 17 GRRKPGRPKTTWRRTILSELSKHQLTLAEAQHMARDRRKWKRFVAALCPTGDEE 70
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,811,638
Number of Sequences: 59808
Number of extensions: 304619
Number of successful extensions: 678
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -