Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021901
         (606 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical pr...    37   0.013
AF106575-15|AAC78164.2|  350|Caenorhabditis elegans Serpentine r...    31   0.48 
AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical pr...    28   4.5  
U50301-2|AAM29675.1|  362|Caenorhabditis elegans Hypothetical pr...    28   4.5  
U40028-6|AAA81117.1|  241|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical
           protein R03D7.2 protein.
          Length = 542

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 22/72 (30%), Positives = 35/72 (48%)
 Frame = +1

Query: 1   VEGKRPRGRSPKRWSDQISEQTSGPLSAALHQATDRNRWRLTVDKLKRSHDPQQLGSDGE 180
           ++G  PR RSP R     S  +S  +S++LH    R R R    + +     QQL    E
Sbjct: 12  IDGAAPRSRSPHRRQPHHSRSSSNNISSSLHSRLRRRR-RSRSQRKQLQWQQQQLRLRKE 70

Query: 181 EESKTRRVLK*C 216
           +++++RR    C
Sbjct: 71  QQNQSRRRTSSC 82


>AF106575-15|AAC78164.2|  350|Caenorhabditis elegans Serpentine
           receptor, class w protein91 protein.
          Length = 350

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = -3

Query: 499 IVKPKRKRKTKLRSFDIIYEKNTGDTKSLRIITQFRIFL 383
           +V+ KR  K+++ S  ++Y+ NT  T +L II  F IFL
Sbjct: 248 VVELKRTEKSRISS-SVLYKNNTEKTTNLVIIMTFSIFL 285


>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
 Frame = +1

Query: 10  KRPRGRSPKRWSDQISEQTS-----GPLSAALH-QATDRNRWRLTV 129
           KRP GR P RW+D + ++ +     G +      QA DR  W+  +
Sbjct: 150 KRPVGRPPMRWNDSLRKEVTTRDAFGQVKQLWSTQAKDRKAWKAVI 195


>Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical
           protein C07A9.10 protein.
          Length = 254

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
 Frame = +1

Query: 10  KRPRGRSPKRWSDQISEQT------SGPLSAALHQATDRNRWRLTVDKLKRSHDPQQL 165
           KRP G+ P RW+D + ++       +  ++    QA DR  W+  + +   + +P+ +
Sbjct: 14  KRPVGKPPMRWTDSLRKEITTRDMGNNIITPWSTQAKDRKAWKAVI-RTTETREPKNI 70


>U50301-2|AAM29675.1|  362|Caenorhabditis elegans Hypothetical
           protein F20D6.5 protein.
          Length = 362

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 8/29 (27%), Positives = 20/29 (68%)
 Frame = +1

Query: 316 VHSSQANQIKYISPFRIKSVQFPKIFEIE 402
           +H+++ +   ++  F  K++ +PKI+E+E
Sbjct: 72  LHNTEVDAYTFLQKFSDKNISYPKIYELE 100


>U40028-6|AAA81117.1|  241|Caenorhabditis elegans Hypothetical
           protein T05A7.2 protein.
          Length = 241

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = +1

Query: 214 CYIDVCSLETSSLFFLPFNSTYSSNAF*CSLKTYVHSSQANQIKYI----SPFRIKSV 375
           CYI   S E S+   L FN  Y S    C+    +HS +  ++ YI    SPF I SV
Sbjct: 169 CYI--MSHENSTSPILSFNDAYKSCQDNCANLVSIHSRR--ELSYIQGIYSPFNISSV 222


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,193,454
Number of Sequences: 27780
Number of extensions: 236761
Number of successful extensions: 567
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)