Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021901
         (606 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g31840.1 68415.m03888 expressed protein                             31   0.78 
At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon domain-con...    29   1.8  
At5g43020.1 68418.m05248 leucine-rich repeat transmembrane prote...    28   5.5  
At1g14900.1 68414.m01781 high-mobility-group protein / HMG-I/Y p...    28   5.5  

>At2g31840.1 68415.m03888 expressed protein
          Length = 350

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +1

Query: 46  DQISEQTSGPLSAALHQATDRNRWRLTVDKLKRSHDPQQLGSDGEEESKTRRVLK 210
           D++ E+T G   A+L    +R  WR T+ ++   H   +   + +   K R++ K
Sbjct: 90  DEVKEETFGGKEASLDDPVERREWRKTIREVIDKHPDIEEDEEIDMVEKRRKMQK 144


>At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon
           domain-containing protein similar to SP|Q13144
           Translation initiation factor eIF-2B epsilon subunit
           (eIF-2B GDP-GTP exchange factor) {Homo sapiens};
           contains Pfam profile PF02020:
           eIF4-gamma/eIF5/eIF2-epsilon
          Length = 676

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +1

Query: 214 CYIDVCSLETSSLF 255
           CYID+CSLE  SLF
Sbjct: 218 CYIDICSLEVLSLF 231


>At5g43020.1 68418.m05248 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 669

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -2

Query: 140 FSLSTVSLHRFRSVAWCSAALSGPLVCSEIWSDQRLGLR 24
           F LS ++ HR R++ +    L+GP+    + SD+ + LR
Sbjct: 139 FPLSVLAFHRLRTLDFSFNNLTGPIPSGLVLSDRLIYLR 177


>At1g14900.1 68414.m01781 high-mobility-group protein / HMG-I/Y
           protein nearly identical to high-mobility-group protein
           HMG-I/Y protein [Arabidopsis thaliana] GI:1429211;
           contains Pfam profiles PF00538: linker histone H1 and H5
           family, PF02178: AT hook motif
          Length = 204

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +1

Query: 10  KRPRGRSPKRWSDQISEQTSGPLSAALHQATDRNRWRLTVDKLKRSHDPQQ 162
           KR RGR PK+ +   S+  +  + AA   +TD  R R    K K   +P Q
Sbjct: 97  KRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPKPKDPSEPPQ 147



 Score = 27.5 bits (58), Expect = 7.3
 Identities = 20/43 (46%), Positives = 22/43 (51%)
 Frame = +1

Query: 13  RPRGRSPKRWSDQISEQTSGPLSAALHQATDRNRWRLTVDKLK 141
           RPRGR PKR     SE  + P  AA  QAT   R R    K+K
Sbjct: 156 RPRGRPPKRPRTD-SETVAAPEPAA--QATGERRGRGRPPKVK 195


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,343,247
Number of Sequences: 28952
Number of extensions: 212133
Number of successful extensions: 458
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)