Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021898
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce...    82   5e-17
SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa...    42   9e-05
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    30   0.30 
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    28   1.2  
SPBC215.14c |vps20||vacuolar sorting protein Vps20|Schizosacchar...    27   2.1  
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    27   2.8  
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    27   2.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   8.5  
SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29 |Schizosa...    25   8.5  

>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 82.2 bits (194), Expect = 5e-17
 Identities = 35/85 (41%), Positives = 59/85 (69%)
 Frame = +3

Query: 255 ELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQSFNMEQANYATQTLK 434
           +L  ++ +++  R GP + ++KQ+AM VL+QKK+YE QL  L+ QSFNMEQA   T++LK
Sbjct: 41  QLSVFQQKIANTRPGPGQTALKQRAMNVLRQKKIYESQLQQLQQQSFNMEQAAMTTESLK 100

Query: 435 DTHTTISAMKDGVTQMKKEFKKINM 509
           +T  T+  M++   Q+K + K +++
Sbjct: 101 NTMATVQTMQETARQLKSQSKNVSI 125



 Score = 49.6 bits (113), Expect = 3e-07
 Identities = 21/42 (50%), Positives = 30/42 (71%)
 Frame = +1

Query: 136 MNRLFGRAKPKEPGPSITDCIKNVDGRADNIEQKVQKLDTNL 261
           M+RLFGR  P +P  S+TD I ++D R+D++E K+ KLD  L
Sbjct: 1   MHRLFGRKPPTQPTASLTDAIDSLDKRSDSVEVKIAKLDAQL 42


>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
           Vps32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 41.5 bits (93), Expect = 9e-05
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = +3

Query: 276 QMSKMREGPAKNSVKQK--AMRVLKQKKMYEQQLDNLRAQSFNMEQANYATQTLKDTHTT 449
           Q+++  E   KN+   K  A+  LK+KKM+E +L  +     N+EQ  ++ Q       T
Sbjct: 41  QIAEQTEIARKNATTNKRLALTALKRKKMHENELVKIEGSRNNIEQQLFSIQNANLNFET 100

Query: 450 ISAMKDGVTQMK 485
           + AM+ G   MK
Sbjct: 101 LQAMRQGAEAMK 112


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 7/17 (41%), Positives = 15/17 (88%)
 Frame = -2

Query: 515 WNHINLLKFFFHLCYTI 465
           W+H+++L+FF+H C+ +
Sbjct: 356 WHHLDMLRFFYHPCFKL 372


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 434 GHSYHNICXEGWC 472
           GH +HN C E WC
Sbjct: 57  GHYFHNHCLESWC 69


>SPBC215.14c |vps20||vacuolar sorting protein
           Vps20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 226

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 306 KNSVKQKAMRVLKQKKMYEQQLDNLRAQSFNMEQ 407
           ++S K+ A+R LK KK+Y   +     Q  N+EQ
Sbjct: 48  RDSDKRGALRALKAKKLYSGLITQTYGQLGNIEQ 81


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 284 AHLILVFSKFVSSFWTFCSILSARPSTFLMQS 189
           A L+L+ S     FWTF   L+     FL+QS
Sbjct: 273 AVLLLIVSSVCIPFWTFERTLAKLAKVFLLQS 304


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 284 AHLILVFSKFVSSFWTFCSILSARPSTFLMQS 189
           A L+L+ S     FWTF   L+     FL+QS
Sbjct: 240 AVLLLIVSSVCIPFWTFERTLAKLAKVFLLQS 271


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -2

Query: 554 VPSYQLTHHLHHQWNHINLLKFFFHLCYTIL 462
           + +YQL   LH+ +NH+  L   +   Y ++
Sbjct: 592 IDAYQLADGLHYIFNHVGQLTGMYRYKYRLM 622


>SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +1

Query: 190 DCIKNVDGRADNIEQKVQKLDTNLENT 270
           +C K VDG  + IE++++  D  ++ +
Sbjct: 34  ECYKTVDGDDNPIEERIKACDAGIQTS 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,337,878
Number of Sequences: 5004
Number of extensions: 45637
Number of successful extensions: 169
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)