Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021898
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0020 + 143273-143592,144278-144371,144466-144537,144675-14... 85 4e-17
01_01_0022 - 170045-170095,170406-170554,170764-170875,171398-17... 76 2e-14
09_02_0152 + 5040845-5041001,5042645-5042757,5043556-5043816,504... 42 5e-04
06_03_0717 + 23834965-23835051,23836760-23836859,23837685-238377... 40 0.001
06_01_0784 - 5868545-5868888,5868990-5869085,5870313-5870394,587... 32 0.40
02_01_0301 + 2011707-2015423,2016982-2017182,2017670-2017786,201... 31 0.93
10_08_0187 + 15592130-15592512,15592597-15592972 30 1.6
01_01_0221 + 1887610-1887838,1889958-1890263,1890631-1890920 30 1.6
02_05_1335 - 35770403-35770543,35770630-35770755,35770859-357709... 28 6.6
08_02_0722 + 20416573-20416765,20417738-20417832,20418200-204183... 27 8.7
>05_01_0020 +
143273-143592,144278-144371,144466-144537,144675-144786,
145179-145327,145484-145510,145931-145981
Length = 274
Score = 85.0 bits (201), Expect = 4e-17
Identities = 38/85 (44%), Positives = 59/85 (69%)
Frame = +3
Query: 255 ELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQSFNMEQANYATQTLK 434
EL +YKDQ+ K R GPA+ ++K +AMRVLKQ++MYE Q D L Q++N++Q +A++ LK
Sbjct: 74 ELARYKDQIKKTRPGPAQEAIKARAMRVLKQRRMYEGQRDMLYNQTYNLDQVAFASEGLK 133
Query: 435 DTHTTISAMKDGVTQMKKEFKKINM 509
D T++AMK ++K K + +
Sbjct: 134 DAQQTMTAMKAANKELKGMMKTVKL 158
Score = 36.7 bits (81), Expect = 0.014
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = +2
Query: 509 DSIDDVNDELADMMEQADEVQEALGRQYGM 598
+ ID + DE+ D+M+ ++E+QE LGR Y +
Sbjct: 159 EDIDSLQDEMMDLMDVSNEIQETLGRSYNV 188
>01_01_0022 -
170045-170095,170406-170554,170764-170875,171398-171469,
171578-171671,171770-171921,172004-172072
Length = 232
Score = 76.2 bits (179), Expect = 2e-14
Identities = 33/85 (38%), Positives = 58/85 (68%)
Frame = +3
Query: 255 ELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQSFNMEQANYATQTLK 434
EL +YK+Q+ K R GP+++++K +A+R+LK K+MYE+Q + L Q++N++Q +A LK
Sbjct: 41 ELGRYKEQIRKTRPGPSQDAIKARAIRLLKHKRMYEEQRNMLYNQTYNLDQVAFAADGLK 100
Query: 435 DTHTTISAMKDGVTQMKKEFKKINM 509
D T++AMK ++K K + +
Sbjct: 101 DAQQTMNAMKAANKELKGMMKTVKI 125
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/42 (38%), Positives = 28/42 (66%)
Frame = +1
Query: 136 MNRLFGRAKPKEPGPSITDCIKNVDGRADNIEQKVQKLDTNL 261
M ++FG K K+P PSI D + ++ R ++++ K++KLD L
Sbjct: 1 MKKIFGAKKSKDPPPSIQDATERINKRGESVDDKIKKLDEEL 42
Score = 37.9 bits (84), Expect = 0.006
Identities = 13/30 (43%), Positives = 24/30 (80%)
Frame = +2
Query: 509 DSIDDVNDELADMMEQADEVQEALGRQYGM 598
+ ID++ DE+ D+M+ ++E+QE+LGR Y +
Sbjct: 126 EDIDNMQDEMTDLMDVSNEIQESLGRSYNI 155
>09_02_0152 + 5040845-5041001,5042645-5042757,5043556-5043816,
5043954-5044058,5044726-5044791,5044882-5044999,
5045018-5045103,5045900-5046424,5046534-5047115,
5047203-5047385,5049326-5049392,5049685-5049791,
5049977-5050076,5050228-5050313,5050394-5050485,
5050591-5050705,5050792-5050983
Length = 984
Score = 41.5 bits (93), Expect = 5e-04
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Frame = +3
Query: 261 RKYKDQMSKMRE-GPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQSFNMEQANYATQTLKD 437
+K ++ + +E AKN K+ A++ LK+KK+YEQQ++ L + + K
Sbjct: 804 KKAAAELERAKEFSKAKN--KRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKA 861
Query: 438 THTTISAMKDGVTQMKKEFKKINM 509
T T+ A++ G MK K N+
Sbjct: 862 TTETVDALRTGAAAMKAMQKATNI 885
>06_03_0717 +
23834965-23835051,23836760-23836859,23837685-23837770,
23837867-23837958,23838659-23838773,23838847-23839029
Length = 220
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/69 (31%), Positives = 37/69 (53%)
Frame = +3
Query: 303 AKNSVKQKAMRVLKQKKMYEQQLDNLRAQSFNMEQANYATQTLKDTHTTISAMKDGVTQM 482
AKN K+ A++ LK+K++YEQQ++ L + + K T T+ A++ G + M
Sbjct: 58 AKN--KRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAM 115
Query: 483 KKEFKKINM 509
K K N+
Sbjct: 116 KAMHKATNI 124
>06_01_0784 -
5868545-5868888,5868990-5869085,5870313-5870394,
5870639-5870839,5871810-5871818
Length = 243
Score = 31.9 bits (69), Expect = 0.40
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 11/53 (20%)
Frame = +3
Query: 252 HEL-RKYKDQMSK-----MREGPAKNSVKQKAMRVLKQ-----KKMYEQQLDN 377
HE+ +++KD ++K +EG AK +Q+A R LKQ KK Y++ L+N
Sbjct: 30 HEIGKRHKDNVTKRLATMQKEGAAKEKEQQQAARALKQIEAKAKKSYQKDLEN 82
>02_01_0301 + 2011707-2015423,2016982-2017182,2017670-2017786,
2018030-2018122
Length = 1375
Score = 30.7 bits (66), Expect = 0.93
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = +3
Query: 279 MSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQSFNMEQANYATQTLKDTHTTISA 458
+SK E N ++KA++ L E + LR +EQ Q L+ +TISA
Sbjct: 858 ISKEEEEHGVNPAREKALQPLTSSTELETLTEILRLDGSELEQFQACFQELQYPVSTISA 917
Query: 459 MKDGVTQM 482
+ V Q+
Sbjct: 918 RRRDVAQL 925
>10_08_0187 + 15592130-15592512,15592597-15592972
Length = 252
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 382 RRLSSCCSYIFFCFNTLIAFCL 317
RRL + C + FCF L+ FCL
Sbjct: 32 RRLCALCPFDTFCFRPLLGFCL 53
>01_01_0221 + 1887610-1887838,1889958-1890263,1890631-1890920
Length = 274
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 569 ELHQLVPSYQLTHHLHHQWNHINLLKFFFHLCY 471
ELH + P Y+ H HH +N N L F L +
Sbjct: 150 ELHDIKPLYKYLHTYHHIYNKENTLSPFAGLAF 182
>02_05_1335 -
35770403-35770543,35770630-35770755,35770859-35770942,
35771444-35771656,35771759-35771977
Length = 260
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/69 (18%), Positives = 34/69 (49%)
Frame = +3
Query: 303 AKNSVKQKAMRVLKQKKMYEQQLDNLRAQSFNMEQANYATQTLKDTHTTISAMKDGVTQM 482
A N + + ++ ++ +YE+ L+ ++ + N + + HTT+SA+ V +
Sbjct: 96 AYNDLSSHSTKLERECTLYERDLERAMESCDDLAKENDEMRARLNDHTTLSALTTQVEAL 155
Query: 483 KKEFKKINM 509
K+ + + +
Sbjct: 156 HKDKENLRI 164
>08_02_0722 +
20416573-20416765,20417738-20417832,20418200-20418317,
20418494-20418510,20418601-20418663,20420145-20420219
Length = 186
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Frame = +3
Query: 288 MREGPAKNSVKQKAMRVLKQKKMYEQ---QLDNLRAQSFNM-EQANYATQTLKDTHTTIS 455
+RE P KQ AMR+L+ + Y + + DNL+ SF M ++AN T+ ++D S
Sbjct: 126 IRESPRH---KQLAMRILEVRSAYVKHDFEWDNLKRLSFKMVDEAN--TKLMRDYVLETS 180
Query: 456 AMKD 467
++D
Sbjct: 181 HIED 184
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,365,832
Number of Sequences: 37544
Number of extensions: 263268
Number of successful extensions: 800
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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