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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021898
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016448-6|AAB65951.1|  217|Caenorhabditis elegans Hypothetical ...   116   2e-26
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p...    35   0.039
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr...    35   0.039
J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch...    35   0.039
Z81568-15|CAB04595.2|  610|Caenorhabditis elegans Hypothetical p...    30   1.1  
Z81568-14|CAB04591.2|  608|Caenorhabditis elegans Hypothetical p...    30   1.1  
Z92777-7|CAI79120.1|  294|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z92777-2|CAB07167.1|  387|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AL117203-2|CAB55104.1|  321|Caenorhabditis elegans Hypothetical ...    28   4.4  
Z75532-2|CAA99812.1|  839|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U41277-8|AAA82479.1|  285|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical ...    27   7.7  
AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical ...    27   7.7  

>AF016448-6|AAB65951.1|  217|Caenorhabditis elegans Hypothetical
           protein F41E6.9 protein.
          Length = 217

 Score =  116 bits (278), Expect = 2e-26
 Identities = 51/85 (60%), Positives = 69/85 (81%)
 Frame = +3

Query: 255 ELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQSFNMEQANYATQTLK 434
           +L K +DQMSKMREGP+KN +KQKA+RVLKQK+MYE Q   L  Q+FNM+Q+N+A Q +K
Sbjct: 40  DLMKLRDQMSKMREGPSKNLIKQKALRVLKQKRMYENQKGQLDQQAFNMDQSNFAIQGMK 99

Query: 435 DTHTTISAMKDGVTQMKKEFKKINM 509
           D   T++AMKDG+  M+KE+KK+N+
Sbjct: 100 DNQVTVAAMKDGLKTMQKEYKKMNI 124



 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 22/46 (47%), Positives = 32/46 (69%)
 Frame = +1

Query: 136 MNRLFGRAKPKEPGPSITDCIKNVDGRADNIEQKVQKLDTNLENTR 273
           MNR+FG  K K P P + + I NV+ R+D+I++K+QKLD +L   R
Sbjct: 1   MNRIFGTGK-KVPPPDLNNAISNVESRSDSIDKKIQKLDQDLMKLR 45



 Score = 37.5 bits (83), Expect = 0.007
 Identities = 13/28 (46%), Positives = 22/28 (78%)
 Frame = +2

Query: 509 DSIDDVNDELADMMEQADEVQEALGRQY 592
           D I+D+ D++ DM++  +E+QEA+ RQY
Sbjct: 125 DQIEDLQDQMEDMLDMNNEIQEAMSRQY 152


>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
            protein F11C3.3 protein.
          Length = 1963

 Score = 35.1 bits (77), Expect = 0.039
 Identities = 21/91 (23%), Positives = 42/91 (46%)
 Frame = +3

Query: 231  TESPETGHELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQSFNMEQA 410
            +E     H++R  +D+M +  E  AK + ++K    + +K M + Q +  +    N  +A
Sbjct: 975  SEKQSKDHQIRSLQDEMQQQDEAIAKLNKEKKHQEEINRKLMEDLQSEEDKGNHQNKVKA 1034

Query: 411  NYATQTLKDTHTTISAMKDGVTQMKKEFKKI 503
                QTL D   ++   K     + K+ +K+
Sbjct: 1035 K-LEQTLDDLEDSLEREKRARADLDKQKRKV 1064


>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical protein
            F11C3.3 protein.
          Length = 1963

 Score = 35.1 bits (77), Expect = 0.039
 Identities = 21/91 (23%), Positives = 42/91 (46%)
 Frame = +3

Query: 231  TESPETGHELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQSFNMEQA 410
            +E     H++R  +D+M +  E  AK + ++K    + +K M + Q +  +    N  +A
Sbjct: 975  SEKQSKDHQIRSLQDEMQQQDEAIAKLNKEKKHQEEINRKLMEDLQSEEDKGNHQNKVKA 1034

Query: 411  NYATQTLKDTHTTISAMKDGVTQMKKEFKKI 503
                QTL D   ++   K     + K+ +K+
Sbjct: 1035 K-LEQTLDDLEDSLEREKRARADLDKQKRKV 1064


>J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain
            protein.
          Length = 1966

 Score = 35.1 bits (77), Expect = 0.039
 Identities = 21/91 (23%), Positives = 42/91 (46%)
 Frame = +3

Query: 231  TESPETGHELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQSFNMEQA 410
            +E     H++R  +D+M +  E  AK + ++K    + +K M + Q +  +    N  +A
Sbjct: 978  SEKQSKDHQIRSLQDEMQQQDEAIAKLNKEKKHQEEINRKLMEDLQSEEDKGNHQNKVKA 1037

Query: 411  NYATQTLKDTHTTISAMKDGVTQMKKEFKKI 503
                QTL D   ++   K     + K+ +K+
Sbjct: 1038 K-LEQTLDDLEDSLEREKRARADLDKQKRKV 1067


>Z81568-15|CAB04595.2|  610|Caenorhabditis elegans Hypothetical
           protein K08E3.3b protein.
          Length = 610

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/71 (22%), Positives = 37/71 (52%)
 Frame = +3

Query: 288 MREGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQSFNMEQANYATQTLKDTHTTISAMKD 467
           ++  P+KN + +  + +LK+K+  E      + ++ N +Q  Y T   K  H  +S ++ 
Sbjct: 312 LKSSPSKNRIIRNFLGILKEKEADE------KPEASNNDQLMY-TDKSKPAHVRLSCLRS 364

Query: 468 GVTQMKKEFKK 500
            +  M+K+ ++
Sbjct: 365 KIRDMEKQLEQ 375


>Z81568-14|CAB04591.2|  608|Caenorhabditis elegans Hypothetical
           protein K08E3.3a protein.
          Length = 608

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/71 (22%), Positives = 37/71 (52%)
 Frame = +3

Query: 288 MREGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQSFNMEQANYATQTLKDTHTTISAMKD 467
           ++  P+KN + +  + +LK+K+  E      + ++ N +Q  Y T   K  H  +S ++ 
Sbjct: 312 LKSSPSKNRIIRNFLGILKEKEADE------KPEASNNDQLMY-TDKSKPAHVRLSCLRS 364

Query: 468 GVTQMKKEFKK 500
            +  M+K+ ++
Sbjct: 365 KIRDMEKQLEQ 375


>Z92777-7|CAI79120.1|  294|Caenorhabditis elegans Hypothetical
           protein C17H1.10 protein.
          Length = 294

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/84 (20%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +3

Query: 264 KYKDQMSKMREGPAKNSVKQKA-MRVLKQKKMYEQQLDNLRAQSFNMEQANYATQTLKDT 440
           ++ + M K+++   +   +QK   ++LK ++M  +   N+      M   NYA   L + 
Sbjct: 72  EHHETMEKLKQKKIEEIAQQKKEQQILKMEEMKAKSERNVMEHQIRMTNMNYAQNMLSNI 131

Query: 441 HTTISAMKDGVTQMKKEFKKINMI 512
            +  +++   +  M+   K +N+I
Sbjct: 132 ESGQASLA-VIKHMESCIKSVNVI 154


>Z92777-2|CAB07167.1|  387|Caenorhabditis elegans Hypothetical
           protein C17H1.3 protein.
          Length = 387

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +3

Query: 243 ETGHELRKYKDQMSKM----REGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQSFNMEQA 410
           E G EL K+  +M KM     E   +  VKQ A+++L+ K   +++    +     +EQA
Sbjct: 152 ERGAELDKHHKKMLKMVEKSHEDCTREKVKQHALKMLEMKNEGQRKAIEHKIVMEKLEQA 211

Query: 411 NYATQTL 431
              +Q L
Sbjct: 212 RGMSQRL 218


>AL117203-2|CAB55104.1|  321|Caenorhabditis elegans Hypothetical
           protein Y48C3A.3 protein.
          Length = 321

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 237 FLFNIIGSAIYVFNAIRNAGARFFGFRSSE*SVHVWFKTLIELGK 103
           FLF +IGS  YV   +R       GF S E  +++  + L  + K
Sbjct: 188 FLFKLIGSRTYVSALLRRITGSDIGFHSREDIINIGSEDLKAISK 232


>Z75532-2|CAA99812.1|  839|Caenorhabditis elegans Hypothetical
           protein C54G10.2 protein.
          Length = 839

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = +3

Query: 234 ESPETGHELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQSFNMEQAN 413
           ++PE   E  K K+  S  +E P K S+  K  +   QKK    + D  +  S +   + 
Sbjct: 200 KTPEKRKETPKKKELPSVKKEFPKKQSIPVKKEKETPQKKALSVKKDPPKVTSESSSSSQ 259

Query: 414 YATQTL 431
            +T ++
Sbjct: 260 VSTSSV 265


>U41277-8|AAA82479.1|  285|Caenorhabditis elegans Hypothetical
           protein C06E4.8 protein.
          Length = 285

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 300 PAKNSVKQKAMRVLKQKKMYEQQLDNLRAQ 389
           P K ++ +   ++ KQ+K YEQ + N+RA+
Sbjct: 35  PNKETIAELRRQIGKQRKHYEQLIKNVRAK 64


>AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical
           protein H06I04.3c protein.
          Length = 786

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/56 (26%), Positives = 33/56 (58%)
 Frame = +3

Query: 225 Y*TESPETGHELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQS 392
           Y  ++P T  ++  Y+++M +    P+K   + KA    KQKKM +++L++ + ++
Sbjct: 677 YFKQTPVTKEQVALYRERMREFNARPSKKVAEAKAR---KQKKM-QRKLESAKKKA 728


>AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical
           protein H06I04.3a protein.
          Length = 833

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/56 (26%), Positives = 33/56 (58%)
 Frame = +3

Query: 225 Y*TESPETGHELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQS 392
           Y  ++P T  ++  Y+++M +    P+K   + KA    KQKKM +++L++ + ++
Sbjct: 677 YFKQTPVTKEQVALYRERMREFNARPSKKVAEAKAR---KQKKM-QRKLESAKKKA 728


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,924,210
Number of Sequences: 27780
Number of extensions: 254969
Number of successful extensions: 921
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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