Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021898
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      26   0.25 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   7.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   9.2  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 563 HQLVPSYQLTHHLHH 519
           H+ +P YQ  HHLHH
Sbjct: 64  HRDLPIYQSHHHLHH 78


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 364 CSYIFFCFNTLIAFCLT 314
           C   FFC N + ++C T
Sbjct: 284 CWVPFFCVNIVTSYCKT 300


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = -3

Query: 103  RNFSEPILINLQILLAFLN 47
            +NF++P+L+N Q+   +L+
Sbjct: 1032 KNFNQPLLVNDQLGQLYLD 1050


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -3

Query: 184 CWGQVLWVSLFRIICSC 134
           CW +    +  RI+C+C
Sbjct: 392 CWSRDFRRAFVRILCAC 408


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,644
Number of Sequences: 438
Number of extensions: 2702
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)