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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021898
         (600 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10640.1 68416.m01280 SNF7 family protein contains Pfam domai...    88   4e-18
At5g04850.1 68418.m00508 SNF7 family protein contains Pfam domai...    87   1e-17
At3g10640.2 68416.m01279 SNF7 family protein contains Pfam domai...    59   3e-09
At5g16730.1 68418.m01959 expressed protein weak similarity to mi...    35   0.036
At3g61570.1 68416.m06896 intracellular protein transport protein...    32   0.33 
At1g16410.2 68414.m01962 cytochrome P450, putative similar to gb...    32   0.33 
At1g16410.1 68414.m01963 cytochrome P450, putative similar to gb...    32   0.33 
At3g02580.1 68416.m00249 delta 7-sterol-C5-desaturase (STE1) ide...    30   1.3  
At3g02590.1 68416.m00250 delta 7-sterol-C5-desaturase, putative ...    27   7.2  
At2g29910.1 68415.m03632 F-box family protein contains F-box dom...    27   9.5  
At2g26980.3 68415.m03237 CBL-interacting protein kinase 3 (CIPK3...    27   9.5  
At2g19830.1 68415.m02319 SNF7 family protein contains Pfam domai...    27   9.5  

>At3g10640.1 68416.m01280 SNF7 family protein contains Pfam domain,
           PF03357: SNF7 family
          Length = 235

 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 41/85 (48%), Positives = 59/85 (69%)
 Frame = +3

Query: 255 ELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQSFNMEQANYATQTLK 434
           EL KYK+Q+ K R GPA+ +VK +AMRVLKQKKMYE Q D L  Q+FN++Q ++A + LK
Sbjct: 41  ELCKYKEQLKKTRPGPAQEAVKARAMRVLKQKKMYEGQRDMLYNQTFNLDQVSFAAEGLK 100

Query: 435 DTHTTISAMKDGVTQMKKEFKKINM 509
           D   T++A+K    ++K   K + +
Sbjct: 101 DAQQTMTALKSANKELKGMMKTVKI 125



 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 19/42 (45%), Positives = 26/42 (61%)
 Frame = +1

Query: 136 MNRLFGRAKPKEPGPSITDCIKNVDGRADNIEQKVQKLDTNL 261
           M R+FG  K  EP PSI D    ++ R D++E K++KLD  L
Sbjct: 1   MRRVFGAKKNTEPPPSIQDASDRINKRGDSVEDKIKKLDVEL 42



 Score = 36.3 bits (80), Expect = 0.015
 Identities = 13/28 (46%), Positives = 22/28 (78%)
 Frame = +2

Query: 515 IDDVNDELADMMEQADEVQEALGRQYGM 598
           ID++ DE+ D+M+ + E+QE+LGR Y +
Sbjct: 128 IDNLQDEMMDLMDVSSEIQESLGRSYNI 155


>At5g04850.1 68418.m00508 SNF7 family protein contains Pfam domain,
           PF03357: SNF7 family
          Length = 235

 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 40/85 (47%), Positives = 58/85 (68%)
 Frame = +3

Query: 255 ELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQSFNMEQANYATQTLK 434
           EL KYKDQ+ + R GPA  ++K +AMRVLKQKKMYE Q D L  Q+FN++Q ++A + LK
Sbjct: 41  ELCKYKDQIKRTRPGPALEAIKARAMRVLKQKKMYEGQRDMLYNQTFNLDQVSFAAEGLK 100

Query: 435 DTHTTISAMKDGVTQMKKEFKKINM 509
           D   T++A+K    ++K   K + +
Sbjct: 101 DAQQTMTALKSANKELKGMMKTVKI 125



 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 19/42 (45%), Positives = 27/42 (64%)
 Frame = +1

Query: 136 MNRLFGRAKPKEPGPSITDCIKNVDGRADNIEQKVQKLDTNL 261
           M R+FG    KEP PSI D    ++ R D++E+KV++LD  L
Sbjct: 1   MKRIFGAKNNKEPPPSIQDASDRINKRGDSVEEKVKRLDAEL 42



 Score = 36.3 bits (80), Expect = 0.015
 Identities = 12/28 (42%), Positives = 22/28 (78%)
 Frame = +2

Query: 515 IDDVNDELADMMEQADEVQEALGRQYGM 598
           ID++ D++ D+M+++ E+QE LGR Y +
Sbjct: 128 IDNLQDDMMDLMDESSEIQETLGRSYNV 155


>At3g10640.2 68416.m01279 SNF7 family protein contains Pfam domain,
           PF03357: SNF7 family
          Length = 170

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 27/60 (45%), Positives = 40/60 (66%)
 Frame = +3

Query: 330 MRVLKQKKMYEQQLDNLRAQSFNMEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKINM 509
           MRVLKQKKMYE Q D L  Q+FN++Q ++A + LKD   T++A+K    ++K   K + +
Sbjct: 1   MRVLKQKKMYEGQRDMLYNQTFNLDQVSFAAEGLKDAQQTMTALKSANKELKGMMKTVKI 60



 Score = 36.3 bits (80), Expect = 0.015
 Identities = 13/28 (46%), Positives = 22/28 (78%)
 Frame = +2

Query: 515 IDDVNDELADMMEQADEVQEALGRQYGM 598
           ID++ DE+ D+M+ + E+QE+LGR Y +
Sbjct: 63  IDNLQDEMMDLMDVSSEIQESLGRSYNI 90


>At5g16730.1 68418.m01959 expressed protein weak similarity to
           microtubule binding protein D-CLIP-190 [Drosophila
           melanogaster] GI:2773363, SMC2-like condensin
           [Arabidopsis thaliana] GI:14279543
          Length = 853

 Score = 35.1 bits (77), Expect = 0.036
 Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
 Frame = +3

Query: 231 TESPETGHELRKYKDQMSKMREG-PAKNSVKQKAMRVLKQKKMYEQQL-----DNLRAQS 392
           TESP+T   L + K+ + K  E   +    K KA+  LKQ K   +Q+     D L+AQ 
Sbjct: 91  TESPQTTTRLSQIKEDLKKANERISSLEKDKAKALDELKQAKKEAEQVTLKLDDALKAQK 150

Query: 393 FNMEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKI 503
            ++E+ N   +  +     I A+++   ++KKE + +
Sbjct: 151 -HVEE-NSEIEKFQAVEAGIEAVQNNEEELKKELETV 185


>At3g61570.1 68416.m06896 intracellular protein transport protein
           USO1-related contains weak similarity to intracellular
           protein transport protein USO1 (Swiss-Prot:P25386)
           [Saccharomyces cerevisiae]
          Length = 712

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
 Frame = +3

Query: 234 ESPETGHELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQSFNMEQAN 413
           ESP   HE+ +YK ++ K++E  +++ +K  ++      +  E Q+  L  ++ +++Q  
Sbjct: 62  ESP-AHHEIERYKAEIKKLQE--SESDIKALSVNYAALLREKEDQISRLNQENGSLKQNL 118

Query: 414 YATQ-TLKDTHTTIS 455
            +T   LK+  T IS
Sbjct: 119 TSTSAALKEARTDIS 133


>At1g16410.2 68414.m01962 cytochrome P450, putative similar to
           gb|AF069494 cytochrome P450 from Sinapis alba and is a
           member of the PF|00067 Cytochrome P450 family
          Length = 423

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 20/56 (35%), Positives = 31/56 (55%)
 Frame = -2

Query: 308 FSRTLPHFAHLILVFSKFVSSFWTFCSILSARPSTFLMQSVMLGPGSLGFALPNNL 141
           F+ +LP+  H++LVF   ++S      ILS RP+    +S  L PG  G+ +  NL
Sbjct: 4   FTTSLPYPFHILLVFILSMASITLLGRILS-RPTKTKDRSCQLPPGPPGWPILGNL 58


>At1g16410.1 68414.m01963 cytochrome P450, putative similar to
           gb|AF069494 cytochrome P450 from Sinapis alba and is a
           member of the PF|00067 Cytochrome P450 family
          Length = 538

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 20/56 (35%), Positives = 31/56 (55%)
 Frame = -2

Query: 308 FSRTLPHFAHLILVFSKFVSSFWTFCSILSARPSTFLMQSVMLGPGSLGFALPNNL 141
           F+ +LP+  H++LVF   ++S      ILS RP+    +S  L PG  G+ +  NL
Sbjct: 4   FTTSLPYPFHILLVFILSMASITLLGRILS-RPTKTKDRSCQLPPGPPGWPILGNL 58


>At3g02580.1 68416.m00249 delta 7-sterol-C5-desaturase (STE1)
           identical to sterol-C5-desaturase GB:AAD12944 GI:4234768
           from [Arabidopsis thaliana]
          Length = 281

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 569 ELHQLVPSYQLTHHLHHQWNHINLLKFFFHLCY 471
           ELH + P Y+  H  HH +N  N L  F  L +
Sbjct: 149 ELHDIKPLYKYLHATHHIYNKQNTLSPFAGLAF 181


>At3g02590.1 68416.m00250 delta 7-sterol-C5-desaturase, putative
           similar to delta7 sterol C-5 desaturase GI:5031219 from
           [Arabidopsis thaliana]
          Length = 279

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = -2

Query: 569 ELHQLVPSYQLTHHLHHQWNHINLLKFFFHLCYTILHXRYCGMSVLQCLRCIICLFHV 396
           ELH +   Y+  H  HH +N  N L  F  L +  L        +LQ +  +I LF V
Sbjct: 150 ELHDIKFLYKHLHATHHMYNKQNTLSPFAGLAFHPLD------GILQAIPHVIALFIV 201


>At2g29910.1 68415.m03632 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 352

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 462 SXQILWYECPSMSALHNLLVPC*KTGHGDYQVVVHTFSSVSILS 331
           S ++ ++ C SM   HNLL    ++   +     H FSS+S+L+
Sbjct: 310 SLEVFYFCCKSMPVFHNLLTLSFESAKKEAGQCCH-FSSISLLT 352


>At2g26980.3 68415.m03237 CBL-interacting protein kinase 3 (CIPK3)
           identical to CBL-interacting protein kinase 3
           [Arabidopsis thaliana] gi|9280638|gb|AAF86507
          Length = 441

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +3

Query: 345 QKKMYEQQLDNLRA-QSFNMEQANYATQTLKDTH-TTISAMKDGVTQMKKEFKKIN 506
           QKK Y+ +L+N++A +  N+  A    Q     H   +S  K    +  K +KK++
Sbjct: 367 QKKNYKMRLENVKAGRKGNLNVATEIFQVAPSLHMVQVSKSKGDTLEFHKFYKKLS 422


>At2g19830.1 68415.m02319 SNF7 family protein contains Pfam domain,
           PF03357: SNF7 family
          Length = 213

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 509 DSIDDVNDELADMMEQADEVQEALGRQYG 595
           D +D   DE+ +  E   ++QEAL   +G
Sbjct: 121 DDVDKTMDEINEQTENMKQIQEALSAPFG 149


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,970,587
Number of Sequences: 28952
Number of extensions: 228444
Number of successful extensions: 742
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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