BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV021898 (600 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g10640.1 68416.m01280 SNF7 family protein contains Pfam domai... 88 4e-18 At5g04850.1 68418.m00508 SNF7 family protein contains Pfam domai... 87 1e-17 At3g10640.2 68416.m01279 SNF7 family protein contains Pfam domai... 59 3e-09 At5g16730.1 68418.m01959 expressed protein weak similarity to mi... 35 0.036 At3g61570.1 68416.m06896 intracellular protein transport protein... 32 0.33 At1g16410.2 68414.m01962 cytochrome P450, putative similar to gb... 32 0.33 At1g16410.1 68414.m01963 cytochrome P450, putative similar to gb... 32 0.33 At3g02580.1 68416.m00249 delta 7-sterol-C5-desaturase (STE1) ide... 30 1.3 At3g02590.1 68416.m00250 delta 7-sterol-C5-desaturase, putative ... 27 7.2 At2g29910.1 68415.m03632 F-box family protein contains F-box dom... 27 9.5 At2g26980.3 68415.m03237 CBL-interacting protein kinase 3 (CIPK3... 27 9.5 At2g19830.1 68415.m02319 SNF7 family protein contains Pfam domai... 27 9.5 >At3g10640.1 68416.m01280 SNF7 family protein contains Pfam domain, PF03357: SNF7 family Length = 235 Score = 88.2 bits (209), Expect = 4e-18 Identities = 41/85 (48%), Positives = 59/85 (69%) Frame = +3 Query: 255 ELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQSFNMEQANYATQTLK 434 EL KYK+Q+ K R GPA+ +VK +AMRVLKQKKMYE Q D L Q+FN++Q ++A + LK Sbjct: 41 ELCKYKEQLKKTRPGPAQEAVKARAMRVLKQKKMYEGQRDMLYNQTFNLDQVSFAAEGLK 100 Query: 435 DTHTTISAMKDGVTQMKKEFKKINM 509 D T++A+K ++K K + + Sbjct: 101 DAQQTMTALKSANKELKGMMKTVKI 125 Score = 44.4 bits (100), Expect = 6e-05 Identities = 19/42 (45%), Positives = 26/42 (61%) Frame = +1 Query: 136 MNRLFGRAKPKEPGPSITDCIKNVDGRADNIEQKVQKLDTNL 261 M R+FG K EP PSI D ++ R D++E K++KLD L Sbjct: 1 MRRVFGAKKNTEPPPSIQDASDRINKRGDSVEDKIKKLDVEL 42 Score = 36.3 bits (80), Expect = 0.015 Identities = 13/28 (46%), Positives = 22/28 (78%) Frame = +2 Query: 515 IDDVNDELADMMEQADEVQEALGRQYGM 598 ID++ DE+ D+M+ + E+QE+LGR Y + Sbjct: 128 IDNLQDEMMDLMDVSSEIQESLGRSYNI 155 >At5g04850.1 68418.m00508 SNF7 family protein contains Pfam domain, PF03357: SNF7 family Length = 235 Score = 86.6 bits (205), Expect = 1e-17 Identities = 40/85 (47%), Positives = 58/85 (68%) Frame = +3 Query: 255 ELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQSFNMEQANYATQTLK 434 EL KYKDQ+ + R GPA ++K +AMRVLKQKKMYE Q D L Q+FN++Q ++A + LK Sbjct: 41 ELCKYKDQIKRTRPGPALEAIKARAMRVLKQKKMYEGQRDMLYNQTFNLDQVSFAAEGLK 100 Query: 435 DTHTTISAMKDGVTQMKKEFKKINM 509 D T++A+K ++K K + + Sbjct: 101 DAQQTMTALKSANKELKGMMKTVKI 125 Score = 45.2 bits (102), Expect = 3e-05 Identities = 19/42 (45%), Positives = 27/42 (64%) Frame = +1 Query: 136 MNRLFGRAKPKEPGPSITDCIKNVDGRADNIEQKVQKLDTNL 261 M R+FG KEP PSI D ++ R D++E+KV++LD L Sbjct: 1 MKRIFGAKNNKEPPPSIQDASDRINKRGDSVEEKVKRLDAEL 42 Score = 36.3 bits (80), Expect = 0.015 Identities = 12/28 (42%), Positives = 22/28 (78%) Frame = +2 Query: 515 IDDVNDELADMMEQADEVQEALGRQYGM 598 ID++ D++ D+M+++ E+QE LGR Y + Sbjct: 128 IDNLQDDMMDLMDESSEIQETLGRSYNV 155 >At3g10640.2 68416.m01279 SNF7 family protein contains Pfam domain, PF03357: SNF7 family Length = 170 Score = 58.8 bits (136), Expect = 3e-09 Identities = 27/60 (45%), Positives = 40/60 (66%) Frame = +3 Query: 330 MRVLKQKKMYEQQLDNLRAQSFNMEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKINM 509 MRVLKQKKMYE Q D L Q+FN++Q ++A + LKD T++A+K ++K K + + Sbjct: 1 MRVLKQKKMYEGQRDMLYNQTFNLDQVSFAAEGLKDAQQTMTALKSANKELKGMMKTVKI 60 Score = 36.3 bits (80), Expect = 0.015 Identities = 13/28 (46%), Positives = 22/28 (78%) Frame = +2 Query: 515 IDDVNDELADMMEQADEVQEALGRQYGM 598 ID++ DE+ D+M+ + E+QE+LGR Y + Sbjct: 63 IDNLQDEMMDLMDVSSEIQESLGRSYNI 90 >At5g16730.1 68418.m01959 expressed protein weak similarity to microtubule binding protein D-CLIP-190 [Drosophila melanogaster] GI:2773363, SMC2-like condensin [Arabidopsis thaliana] GI:14279543 Length = 853 Score = 35.1 bits (77), Expect = 0.036 Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 6/97 (6%) Frame = +3 Query: 231 TESPETGHELRKYKDQMSKMREG-PAKNSVKQKAMRVLKQKKMYEQQL-----DNLRAQS 392 TESP+T L + K+ + K E + K KA+ LKQ K +Q+ D L+AQ Sbjct: 91 TESPQTTTRLSQIKEDLKKANERISSLEKDKAKALDELKQAKKEAEQVTLKLDDALKAQK 150 Query: 393 FNMEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKI 503 ++E+ N + + I A+++ ++KKE + + Sbjct: 151 -HVEE-NSEIEKFQAVEAGIEAVQNNEEELKKELETV 185 >At3g61570.1 68416.m06896 intracellular protein transport protein USO1-related contains weak similarity to intracellular protein transport protein USO1 (Swiss-Prot:P25386) [Saccharomyces cerevisiae] Length = 712 Score = 31.9 bits (69), Expect = 0.33 Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 1/75 (1%) Frame = +3 Query: 234 ESPETGHELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQSFNMEQAN 413 ESP HE+ +YK ++ K++E +++ +K ++ + E Q+ L ++ +++Q Sbjct: 62 ESP-AHHEIERYKAEIKKLQE--SESDIKALSVNYAALLREKEDQISRLNQENGSLKQNL 118 Query: 414 YATQ-TLKDTHTTIS 455 +T LK+ T IS Sbjct: 119 TSTSAALKEARTDIS 133 >At1g16410.2 68414.m01962 cytochrome P450, putative similar to gb|AF069494 cytochrome P450 from Sinapis alba and is a member of the PF|00067 Cytochrome P450 family Length = 423 Score = 31.9 bits (69), Expect = 0.33 Identities = 20/56 (35%), Positives = 31/56 (55%) Frame = -2 Query: 308 FSRTLPHFAHLILVFSKFVSSFWTFCSILSARPSTFLMQSVMLGPGSLGFALPNNL 141 F+ +LP+ H++LVF ++S ILS RP+ +S L PG G+ + NL Sbjct: 4 FTTSLPYPFHILLVFILSMASITLLGRILS-RPTKTKDRSCQLPPGPPGWPILGNL 58 >At1g16410.1 68414.m01963 cytochrome P450, putative similar to gb|AF069494 cytochrome P450 from Sinapis alba and is a member of the PF|00067 Cytochrome P450 family Length = 538 Score = 31.9 bits (69), Expect = 0.33 Identities = 20/56 (35%), Positives = 31/56 (55%) Frame = -2 Query: 308 FSRTLPHFAHLILVFSKFVSSFWTFCSILSARPSTFLMQSVMLGPGSLGFALPNNL 141 F+ +LP+ H++LVF ++S ILS RP+ +S L PG G+ + NL Sbjct: 4 FTTSLPYPFHILLVFILSMASITLLGRILS-RPTKTKDRSCQLPPGPPGWPILGNL 58 >At3g02580.1 68416.m00249 delta 7-sterol-C5-desaturase (STE1) identical to sterol-C5-desaturase GB:AAD12944 GI:4234768 from [Arabidopsis thaliana] Length = 281 Score = 29.9 bits (64), Expect = 1.3 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = -2 Query: 569 ELHQLVPSYQLTHHLHHQWNHINLLKFFFHLCY 471 ELH + P Y+ H HH +N N L F L + Sbjct: 149 ELHDIKPLYKYLHATHHIYNKQNTLSPFAGLAF 181 >At3g02590.1 68416.m00250 delta 7-sterol-C5-desaturase, putative similar to delta7 sterol C-5 desaturase GI:5031219 from [Arabidopsis thaliana] Length = 279 Score = 27.5 bits (58), Expect = 7.2 Identities = 19/58 (32%), Positives = 26/58 (44%) Frame = -2 Query: 569 ELHQLVPSYQLTHHLHHQWNHINLLKFFFHLCYTILHXRYCGMSVLQCLRCIICLFHV 396 ELH + Y+ H HH +N N L F L + L +LQ + +I LF V Sbjct: 150 ELHDIKFLYKHLHATHHMYNKQNTLSPFAGLAFHPLD------GILQAIPHVIALFIV 201 >At2g29910.1 68415.m03632 F-box family protein contains F-box domain Pfam:PF00646 Length = 352 Score = 27.1 bits (57), Expect = 9.5 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = -1 Query: 462 SXQILWYECPSMSALHNLLVPC*KTGHGDYQVVVHTFSSVSILS 331 S ++ ++ C SM HNLL ++ + H FSS+S+L+ Sbjct: 310 SLEVFYFCCKSMPVFHNLLTLSFESAKKEAGQCCH-FSSISLLT 352 >At2g26980.3 68415.m03237 CBL-interacting protein kinase 3 (CIPK3) identical to CBL-interacting protein kinase 3 [Arabidopsis thaliana] gi|9280638|gb|AAF86507 Length = 441 Score = 27.1 bits (57), Expect = 9.5 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%) Frame = +3 Query: 345 QKKMYEQQLDNLRA-QSFNMEQANYATQTLKDTH-TTISAMKDGVTQMKKEFKKIN 506 QKK Y+ +L+N++A + N+ A Q H +S K + K +KK++ Sbjct: 367 QKKNYKMRLENVKAGRKGNLNVATEIFQVAPSLHMVQVSKSKGDTLEFHKFYKKLS 422 >At2g19830.1 68415.m02319 SNF7 family protein contains Pfam domain, PF03357: SNF7 family Length = 213 Score = 27.1 bits (57), Expect = 9.5 Identities = 10/29 (34%), Positives = 16/29 (55%) Frame = +2 Query: 509 DSIDDVNDELADMMEQADEVQEALGRQYG 595 D +D DE+ + E ++QEAL +G Sbjct: 121 DDVDKTMDEINEQTENMKQIQEALSAPFG 149 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,970,587 Number of Sequences: 28952 Number of extensions: 228444 Number of successful extensions: 742 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 722 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 742 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1187288784 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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