Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021898
(600 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g10640.1 68416.m01280 SNF7 family protein contains Pfam domai... 88 4e-18
At5g04850.1 68418.m00508 SNF7 family protein contains Pfam domai... 87 1e-17
At3g10640.2 68416.m01279 SNF7 family protein contains Pfam domai... 59 3e-09
At5g16730.1 68418.m01959 expressed protein weak similarity to mi... 35 0.036
At3g61570.1 68416.m06896 intracellular protein transport protein... 32 0.33
At1g16410.2 68414.m01962 cytochrome P450, putative similar to gb... 32 0.33
At1g16410.1 68414.m01963 cytochrome P450, putative similar to gb... 32 0.33
At3g02580.1 68416.m00249 delta 7-sterol-C5-desaturase (STE1) ide... 30 1.3
At3g02590.1 68416.m00250 delta 7-sterol-C5-desaturase, putative ... 27 7.2
At2g29910.1 68415.m03632 F-box family protein contains F-box dom... 27 9.5
At2g26980.3 68415.m03237 CBL-interacting protein kinase 3 (CIPK3... 27 9.5
At2g19830.1 68415.m02319 SNF7 family protein contains Pfam domai... 27 9.5
>At3g10640.1 68416.m01280 SNF7 family protein contains Pfam domain,
PF03357: SNF7 family
Length = 235
Score = 88.2 bits (209), Expect = 4e-18
Identities = 41/85 (48%), Positives = 59/85 (69%)
Frame = +3
Query: 255 ELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQSFNMEQANYATQTLK 434
EL KYK+Q+ K R GPA+ +VK +AMRVLKQKKMYE Q D L Q+FN++Q ++A + LK
Sbjct: 41 ELCKYKEQLKKTRPGPAQEAVKARAMRVLKQKKMYEGQRDMLYNQTFNLDQVSFAAEGLK 100
Query: 435 DTHTTISAMKDGVTQMKKEFKKINM 509
D T++A+K ++K K + +
Sbjct: 101 DAQQTMTALKSANKELKGMMKTVKI 125
Score = 44.4 bits (100), Expect = 6e-05
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +1
Query: 136 MNRLFGRAKPKEPGPSITDCIKNVDGRADNIEQKVQKLDTNL 261
M R+FG K EP PSI D ++ R D++E K++KLD L
Sbjct: 1 MRRVFGAKKNTEPPPSIQDASDRINKRGDSVEDKIKKLDVEL 42
Score = 36.3 bits (80), Expect = 0.015
Identities = 13/28 (46%), Positives = 22/28 (78%)
Frame = +2
Query: 515 IDDVNDELADMMEQADEVQEALGRQYGM 598
ID++ DE+ D+M+ + E+QE+LGR Y +
Sbjct: 128 IDNLQDEMMDLMDVSSEIQESLGRSYNI 155
>At5g04850.1 68418.m00508 SNF7 family protein contains Pfam domain,
PF03357: SNF7 family
Length = 235
Score = 86.6 bits (205), Expect = 1e-17
Identities = 40/85 (47%), Positives = 58/85 (68%)
Frame = +3
Query: 255 ELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQSFNMEQANYATQTLK 434
EL KYKDQ+ + R GPA ++K +AMRVLKQKKMYE Q D L Q+FN++Q ++A + LK
Sbjct: 41 ELCKYKDQIKRTRPGPALEAIKARAMRVLKQKKMYEGQRDMLYNQTFNLDQVSFAAEGLK 100
Query: 435 DTHTTISAMKDGVTQMKKEFKKINM 509
D T++A+K ++K K + +
Sbjct: 101 DAQQTMTALKSANKELKGMMKTVKI 125
Score = 45.2 bits (102), Expect = 3e-05
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = +1
Query: 136 MNRLFGRAKPKEPGPSITDCIKNVDGRADNIEQKVQKLDTNL 261
M R+FG KEP PSI D ++ R D++E+KV++LD L
Sbjct: 1 MKRIFGAKNNKEPPPSIQDASDRINKRGDSVEEKVKRLDAEL 42
Score = 36.3 bits (80), Expect = 0.015
Identities = 12/28 (42%), Positives = 22/28 (78%)
Frame = +2
Query: 515 IDDVNDELADMMEQADEVQEALGRQYGM 598
ID++ D++ D+M+++ E+QE LGR Y +
Sbjct: 128 IDNLQDDMMDLMDESSEIQETLGRSYNV 155
>At3g10640.2 68416.m01279 SNF7 family protein contains Pfam domain,
PF03357: SNF7 family
Length = 170
Score = 58.8 bits (136), Expect = 3e-09
Identities = 27/60 (45%), Positives = 40/60 (66%)
Frame = +3
Query: 330 MRVLKQKKMYEQQLDNLRAQSFNMEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKINM 509
MRVLKQKKMYE Q D L Q+FN++Q ++A + LKD T++A+K ++K K + +
Sbjct: 1 MRVLKQKKMYEGQRDMLYNQTFNLDQVSFAAEGLKDAQQTMTALKSANKELKGMMKTVKI 60
Score = 36.3 bits (80), Expect = 0.015
Identities = 13/28 (46%), Positives = 22/28 (78%)
Frame = +2
Query: 515 IDDVNDELADMMEQADEVQEALGRQYGM 598
ID++ DE+ D+M+ + E+QE+LGR Y +
Sbjct: 63 IDNLQDEMMDLMDVSSEIQESLGRSYNI 90
>At5g16730.1 68418.m01959 expressed protein weak similarity to
microtubule binding protein D-CLIP-190 [Drosophila
melanogaster] GI:2773363, SMC2-like condensin
[Arabidopsis thaliana] GI:14279543
Length = 853
Score = 35.1 bits (77), Expect = 0.036
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Frame = +3
Query: 231 TESPETGHELRKYKDQMSKMREG-PAKNSVKQKAMRVLKQKKMYEQQL-----DNLRAQS 392
TESP+T L + K+ + K E + K KA+ LKQ K +Q+ D L+AQ
Sbjct: 91 TESPQTTTRLSQIKEDLKKANERISSLEKDKAKALDELKQAKKEAEQVTLKLDDALKAQK 150
Query: 393 FNMEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKI 503
++E+ N + + I A+++ ++KKE + +
Sbjct: 151 -HVEE-NSEIEKFQAVEAGIEAVQNNEEELKKELETV 185
>At3g61570.1 68416.m06896 intracellular protein transport protein
USO1-related contains weak similarity to intracellular
protein transport protein USO1 (Swiss-Prot:P25386)
[Saccharomyces cerevisiae]
Length = 712
Score = 31.9 bits (69), Expect = 0.33
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +3
Query: 234 ESPETGHELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQSFNMEQAN 413
ESP HE+ +YK ++ K++E +++ +K ++ + E Q+ L ++ +++Q
Sbjct: 62 ESP-AHHEIERYKAEIKKLQE--SESDIKALSVNYAALLREKEDQISRLNQENGSLKQNL 118
Query: 414 YATQ-TLKDTHTTIS 455
+T LK+ T IS
Sbjct: 119 TSTSAALKEARTDIS 133
>At1g16410.2 68414.m01962 cytochrome P450, putative similar to
gb|AF069494 cytochrome P450 from Sinapis alba and is a
member of the PF|00067 Cytochrome P450 family
Length = 423
Score = 31.9 bits (69), Expect = 0.33
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = -2
Query: 308 FSRTLPHFAHLILVFSKFVSSFWTFCSILSARPSTFLMQSVMLGPGSLGFALPNNL 141
F+ +LP+ H++LVF ++S ILS RP+ +S L PG G+ + NL
Sbjct: 4 FTTSLPYPFHILLVFILSMASITLLGRILS-RPTKTKDRSCQLPPGPPGWPILGNL 58
>At1g16410.1 68414.m01963 cytochrome P450, putative similar to
gb|AF069494 cytochrome P450 from Sinapis alba and is a
member of the PF|00067 Cytochrome P450 family
Length = 538
Score = 31.9 bits (69), Expect = 0.33
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = -2
Query: 308 FSRTLPHFAHLILVFSKFVSSFWTFCSILSARPSTFLMQSVMLGPGSLGFALPNNL 141
F+ +LP+ H++LVF ++S ILS RP+ +S L PG G+ + NL
Sbjct: 4 FTTSLPYPFHILLVFILSMASITLLGRILS-RPTKTKDRSCQLPPGPPGWPILGNL 58
>At3g02580.1 68416.m00249 delta 7-sterol-C5-desaturase (STE1)
identical to sterol-C5-desaturase GB:AAD12944 GI:4234768
from [Arabidopsis thaliana]
Length = 281
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 569 ELHQLVPSYQLTHHLHHQWNHINLLKFFFHLCY 471
ELH + P Y+ H HH +N N L F L +
Sbjct: 149 ELHDIKPLYKYLHATHHIYNKQNTLSPFAGLAF 181
>At3g02590.1 68416.m00250 delta 7-sterol-C5-desaturase, putative
similar to delta7 sterol C-5 desaturase GI:5031219 from
[Arabidopsis thaliana]
Length = 279
Score = 27.5 bits (58), Expect = 7.2
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = -2
Query: 569 ELHQLVPSYQLTHHLHHQWNHINLLKFFFHLCYTILHXRYCGMSVLQCLRCIICLFHV 396
ELH + Y+ H HH +N N L F L + L +LQ + +I LF V
Sbjct: 150 ELHDIKFLYKHLHATHHMYNKQNTLSPFAGLAFHPLD------GILQAIPHVIALFIV 201
>At2g29910.1 68415.m03632 F-box family protein contains F-box domain
Pfam:PF00646
Length = 352
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -1
Query: 462 SXQILWYECPSMSALHNLLVPC*KTGHGDYQVVVHTFSSVSILS 331
S ++ ++ C SM HNLL ++ + H FSS+S+L+
Sbjct: 310 SLEVFYFCCKSMPVFHNLLTLSFESAKKEAGQCCH-FSSISLLT 352
>At2g26980.3 68415.m03237 CBL-interacting protein kinase 3 (CIPK3)
identical to CBL-interacting protein kinase 3
[Arabidopsis thaliana] gi|9280638|gb|AAF86507
Length = 441
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 345 QKKMYEQQLDNLRA-QSFNMEQANYATQTLKDTH-TTISAMKDGVTQMKKEFKKIN 506
QKK Y+ +L+N++A + N+ A Q H +S K + K +KK++
Sbjct: 367 QKKNYKMRLENVKAGRKGNLNVATEIFQVAPSLHMVQVSKSKGDTLEFHKFYKKLS 422
>At2g19830.1 68415.m02319 SNF7 family protein contains Pfam domain,
PF03357: SNF7 family
Length = 213
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 509 DSIDDVNDELADMMEQADEVQEALGRQYG 595
D +D DE+ + E ++QEAL +G
Sbjct: 121 DDVDKTMDEINEQTENMKQIQEALSAPFG 149
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,970,587
Number of Sequences: 28952
Number of extensions: 228444
Number of successful extensions: 742
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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