Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021897X
(484 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P25123 Cluster: Gamma-aminobutyric acid receptor subuni... 62 5e-09
UniRef50_Q8MTJ9 Cluster: Ionotropic GABA receptor beta subunit 1... 40 0.029
UniRef50_A7SQS7 Cluster: Predicted protein; n=1; Nematostella ve... 40 0.039
UniRef50_UPI00015B5C4C Cluster: PREDICTED: similar to GABA-gated... 37 0.27
UniRef50_Q8WSF7 Cluster: GABA A receptor alpha subunit; n=1; Apl... 37 0.27
UniRef50_P48167 Cluster: Glycine receptor subunit beta precursor... 34 1.9
UniRef50_UPI0000E20C28 Cluster: PREDICTED: gamma-aminobutyric ac... 33 2.6
UniRef50_Q0GQR6 Cluster: GABA-gated ion channel; n=2; Apis melli... 33 3.4
UniRef50_A7SVS1 Cluster: Predicted protein; n=5; Nematostella ve... 33 3.4
UniRef50_Q24352 Cluster: Gamma-aminobutyric acid receptor alpha-... 33 3.4
UniRef50_Q7M3M7 Cluster: Gamma-aminobutyric acid A receptor; n=1... 32 5.9
UniRef50_UPI0000E2095B Cluster: PREDICTED: hypothetical protein;... 32 7.8
UniRef50_Q8BQW9 Cluster: Adult male corpora quadrigemina cDNA, R... 32 7.8
UniRef50_Q99928 Cluster: Gamma-aminobutyric acid receptor subuni... 32 7.8
UniRef50_P48169 Cluster: Gamma-aminobutyric acid receptor subuni... 32 7.8
>UniRef50_P25123 Cluster: Gamma-aminobutyric acid receptor subunit
beta precursor (GABA(A) receptor subunit beta); n=45;
Pancrustacea|Rep: Gamma-aminobutyric acid receptor
subunit beta precursor (GABA(A) receptor subunit beta) -
Drosophila melanogaster (Fruit fly)
Length = 606
Score = 62.5 bits (145), Expect = 5e-09
Identities = 30/42 (71%), Positives = 34/42 (80%)
Frame = +1
Query: 352 MFGDVNISAILDSFSISYDKRVRPNYGGKPNVIIEVLKTSFI 477
M GDVNISAILDSFS+SYDKRVRPNYGG P +EV T ++
Sbjct: 53 MLGDVNISAILDSFSVSYDKRVRPNYGGPP---VEVGVTMYV 91
>UniRef50_Q8MTJ9 Cluster: Ionotropic GABA receptor beta subunit 1b;
n=8; Pancrustacea|Rep: Ionotropic GABA receptor beta
subunit 1b - Homarus americanus (American lobster)
Length = 521
Score = 39.9 bits (89), Expect = 0.029
Identities = 17/24 (70%), Positives = 18/24 (75%)
Frame = +1
Query: 361 DVNISAILDSFSISYDKRVRPNYG 432
D NISAILDS YDKR+RP YG
Sbjct: 45 DGNISAILDSLQTGYDKRIRPQYG 68
>UniRef50_A7SQS7 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 155
Score = 39.5 bits (88), Expect = 0.039
Identities = 18/39 (46%), Positives = 27/39 (69%)
Frame = +1
Query: 367 NISAILDSFSISYDKRVRPNYGGKPNVIIEVLKTSFIKF 483
NI+ +L++ YDKR+RPN+GG P + V T+FI+F
Sbjct: 1 NITYLLETLLSGYDKRLRPNFGGAP---VNVSVTTFIEF 36
>UniRef50_UPI00015B5C4C Cluster: PREDICTED: similar to GABA-gated
ion channel; n=1; Nasonia vitripennis|Rep: PREDICTED:
similar to GABA-gated ion channel - Nasonia vitripennis
Length = 442
Score = 36.7 bits (81), Expect = 0.27
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +1
Query: 367 NISAILDSFSISYDKRVRPNYGGKPNVI 450
NIS +LD+ YD VRPN+GG P V+
Sbjct: 49 NISELLDNLLRGYDNSVRPNFGGPPAVV 76
>UniRef50_Q8WSF7 Cluster: GABA A receptor alpha subunit; n=1;
Aplysia californica|Rep: GABA A receptor alpha subunit -
Aplysia californica (California sea hare)
Length = 448
Score = 36.7 bits (81), Expect = 0.27
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +1
Query: 364 VNISAILDSFSISYDKRVRPNYGGK 438
VNIS +LDS YDKR+RP +GG+
Sbjct: 32 VNISQVLDSLLEGYDKRLRPGFGGE 56
>UniRef50_P48167 Cluster: Glycine receptor subunit beta precursor;
n=34; Euteleostomi|Rep: Glycine receptor subunit beta
precursor - Homo sapiens (Human)
Length = 497
Score = 33.9 bits (74), Expect = 1.9
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +1
Query: 373 SAILDSFSISYDKRVRPNYGGKP-NVIIEVLKTSF 474
S IL+ +SYD R+RPN+ G P +V++ + SF
Sbjct: 57 SNILNRLLVSYDPRIRPNFKGIPVDVVVNIFINSF 91
>UniRef50_UPI0000E20C28 Cluster: PREDICTED: gamma-aminobutyric acid
A receptor, alpha 6 isoform 1; n=1; Pan troglodytes|Rep:
PREDICTED: gamma-aminobutyric acid A receptor, alpha 6
isoform 1 - Pan troglodytes
Length = 478
Score = 33.5 bits (73), Expect = 2.6
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 355 FGDVNISAILDSFSISYDKRVRPNYGGK-PNVIIEVLKTSF 474
F N+S ILD+ YD R+RP +GG V ++ TSF
Sbjct: 27 FYSENVSRILDNLLEGYDNRLRPGFGGAVTEVKTDIYVTSF 67
>UniRef50_Q0GQR6 Cluster: GABA-gated ion channel; n=2; Apis
mellifera|Rep: GABA-gated ion channel - Apis mellifera
(Honeybee)
Length = 463
Score = 33.1 bits (72), Expect = 3.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 367 NISAILDSFSISYDKRVRPNYGGKPNVI 450
NIS +LD+ YD VRP++GG P +
Sbjct: 5 NISELLDNLLRGYDNSVRPDFGGPPATV 32
>UniRef50_A7SVS1 Cluster: Predicted protein; n=5; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 318
Score = 33.1 bits (72), Expect = 3.4
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +1
Query: 367 NISAILDSFSISYDKRVRPNYGGKP-NVIIEVLKTSF 474
NIS +LD YDKR+RP YG K ++ +++L SF
Sbjct: 1 NISKLLDDVFKRYDKRIRPYYGIKAVDIQLDMLILSF 37
>UniRef50_Q24352 Cluster: Gamma-aminobutyric acid receptor
alpha-like precursor (GABA(A) receptor alpha-like and
glycine receptor-like subunit of Drosophila); n=3;
Diptera|Rep: Gamma-aminobutyric acid receptor alpha-like
precursor (GABA(A) receptor alpha-like and glycine
receptor-like subunit of Drosophila) - Drosophila
melanogaster (Fruit fly)
Length = 686
Score = 33.1 bits (72), Expect = 3.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 367 NISAILDSFSISYDKRVRPNYGGKPNVI 450
NIS +LD+ YD +RP++GG P I
Sbjct: 108 NISELLDNLLRGYDNSIRPDFGGPPATI 135
>UniRef50_Q7M3M7 Cluster: Gamma-aminobutyric acid A receptor; n=1;
Drosophila sp.|Rep: Gamma-aminobutyric acid A receptor -
Drosophila sp. (Fruit fly)
Length = 210
Score = 32.3 bits (70), Expect = 5.9
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +1
Query: 403 YDKRVRPNYGGKP 441
YDKRVRPNYGG P
Sbjct: 22 YDKRVRPNYGGPP 34
>UniRef50_UPI0000E2095B Cluster: PREDICTED: hypothetical protein;
n=1; Pan troglodytes|Rep: PREDICTED: hypothetical
protein - Pan troglodytes
Length = 260
Score = 31.9 bits (69), Expect = 7.8
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = +1
Query: 193 RGRGAIDRDAGQG*HTEPRRRGT*APCVTPRFSSRLPPPSCRS 321
RGRG R+ G+ + G +P VTPR + R P P CRS
Sbjct: 163 RGRGETGREDGRA---GVGKGGHRSPGVTPRLARRPPDPGCRS 202
>UniRef50_Q8BQW9 Cluster: Adult male corpora quadrigemina cDNA,
RIKEN full-length enriched library, clone:B230362M20
product:gamma-aminobutyric acid (GABA-A) receptor,
subunit gamma 3, full insert sequence; n=4; Amniota|Rep:
Adult male corpora quadrigemina cDNA, RIKEN full-length
enriched library, clone:B230362M20
product:gamma-aminobutyric acid (GABA-A) receptor,
subunit gamma 3, full insert sequence - Mus musculus
(Mouse)
Length = 145
Score = 31.9 bits (69), Expect = 7.8
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 361 DVNISAILDSFSISYDKRVRPNYGGKPNVI 450
D +++ IL+ YDK++RP+ G KP VI
Sbjct: 44 DTDVTLILNKLLREYDKKLRPDIGIKPTVI 73
>UniRef50_Q99928 Cluster: Gamma-aminobutyric acid receptor subunit
gamma-3 precursor (GABA(A) receptor subunit gamma-3);
n=106; Euteleostomi|Rep: Gamma-aminobutyric acid
receptor subunit gamma-3 precursor (GABA(A) receptor
subunit gamma-3) - Homo sapiens (Human)
Length = 467
Score = 31.9 bits (69), Expect = 7.8
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 361 DVNISAILDSFSISYDKRVRPNYGGKPNVI 450
D +++ IL+ YDK++RP+ G KP VI
Sbjct: 44 DTDVTLILNKLLREYDKKLRPDIGIKPTVI 73
>UniRef50_P48169 Cluster: Gamma-aminobutyric acid receptor subunit
alpha-4 precursor (GABA(A) receptor subunit alpha-4);
n=26; Euteleostomi|Rep: Gamma-aminobutyric acid receptor
subunit alpha-4 precursor (GABA(A) receptor subunit
alpha-4) - Homo sapiens (Human)
Length = 554
Score = 31.9 bits (69), Expect = 7.8
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 367 NISAILDSFSISYDKRVRPNYGGK-PNVIIEVLKTSF 474
N + ILDS YD R+RP +GG V ++ TSF
Sbjct: 47 NFTRILDSLLDGYDNRLRPGFGGPVTEVKTDIYVTSF 83
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 379,747,350
Number of Sequences: 1657284
Number of extensions: 6027499
Number of successful extensions: 10855
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 10693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10855
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27710252790
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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