Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021897X
         (484 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   4.5  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   7.9  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    25   7.9  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    25   7.9  

>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 400 SYDKRVRPNYGGKPNVIIEVL 462
           ++ K  RP+YGG+ + II++L
Sbjct: 524 TFSKSARPSYGGQQDGIIDLL 544


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 480 FDETCFKYLDNYVRLTSIVWSYSLIIADAERIQNS 376
           +DE C KYL  Y+ L+  +    LI   +E ++ +
Sbjct: 109 YDEFCSKYLSKYMELSKKIG--GLIAEQSEHVEKA 141


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 355 FGDVNISAILDSFSISYDKRVRPNYGGKP-NVIIEVLKTS 471
           + D N+    DSF+++ D  + P  G +P N I  ++++S
Sbjct: 290 YSDTNLVVSRDSFTLTGDDNLFPEGGLRPANTIDGIVRSS 329


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +1

Query: 355 FGDVNISAILDSFSISYDKRVRPNYGGKPNVIIEVLKTSFIKF 483
           F D N   +LD++   Y+K+ +     K N ++   +  F+ F
Sbjct: 494 FDDFNDEQVLDAYKDVYEKQRKAEQKAKSNGVMNGNQRQFLGF 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,555,258
Number of Sequences: 5004
Number of extensions: 24534
Number of successful extensions: 54
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)