Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021897X
         (484 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14632| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.0002)          40   0.001
SB_37132| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-06)         38   0.006
SB_34848| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.071
SB_9067| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.071
SB_38878| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.12 
SB_27095| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.16 
SB_33279| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.22 
SB_41433| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.6e-07)         31   0.50 
SB_20890| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.50 
SB_53537| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)               30   1.1  
SB_53778| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)               29   1.5  
SB_58314| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-36)         29   2.7  
SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)         28   4.6  
SB_32445| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  

>SB_14632| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.0002)
          Length = 135

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 18/39 (46%), Positives = 27/39 (69%)
 Frame = +1

Query: 367 NISAILDSFSISYDKRVRPNYGGKPNVIIEVLKTSFIKF 483
           NI+ +L++    YDKR+RPN+GG P   + V  T+FI+F
Sbjct: 29  NITYLLETLLSGYDKRLRPNFGGAP---VNVSVTTFIEF 64


>SB_37132| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-06)
          Length = 229

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +1

Query: 367 NISAILDSFSISYDKRVRPNYGGKP-NVIIEVLKTSF 474
           N+S  ++    SYD++VRPNYGG P  V+IE    SF
Sbjct: 18  NLSVFINDALASYDRKVRPNYGGLPVMVLIEFKVISF 54


>SB_34848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 33.9 bits (74), Expect = 0.071
 Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 367 NISAILDSFSISYDKRVRPNYGGKP-NVIIEVLKTSF 474
           N+S +L      YDKRVRP YG KP  V +++L  SF
Sbjct: 21  NVSRLLGKVFEKYDKRVRPFYGIKPLQVSLDMLILSF 57


>SB_9067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 33.9 bits (74), Expect = 0.071
 Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 367 NISAILDSFSISYDKRVRPNYGGKP-NVIIEVLKTSF 474
           N+S +L      YDKRVRP YG KP  V +++L  SF
Sbjct: 296 NVSRLLGKVFEKYDKRVRPFYGIKPLQVSLDMLILSF 332


>SB_38878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 436

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = +1

Query: 370 ISAILDSFSIS--YDKRVRPNYGGKPNVI 450
           +S ILDS   +  YDKR+RPNYG  P ++
Sbjct: 7   VSRILDSILTAEKYDKRLRPNYGAGPVIV 35


>SB_27095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 534

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 367 NISAILDSFSISYDKRVRPNYGGKPNVI 450
           N +  LD    S DKR+RP +GGKP V+
Sbjct: 46  NTTKTLDRLKSSMDKRLRPFFGGKPVVV 73


>SB_33279| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = +1

Query: 361 DVNISAI---LDSFSISYDKRVRPNYGGKP-NVIIEVLKTSF 474
           DVN S I   +D   + YD R+RP +GG P N+ + +   SF
Sbjct: 26  DVNTSIISNAIDGLFVGYDNRLRPYFGGPPLNISVYMSVVSF 67


>SB_41433| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.6e-07)
          Length = 175

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = +1

Query: 370 ISAILDSF--SISYDKRVRPNYGGKPNVI 450
           ++ ILD+    ++YD RVRP Y GKP V+
Sbjct: 57  MTQILDTLLDKVNYDNRVRPFYNGKPVVV 85


>SB_20890| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 41

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 367 NISAILDSFSISYDKRVRPNYG 432
           NIS +LD     YDKR+RP YG
Sbjct: 19  NISKLLDDVFKRYDKRIRPYYG 40


>SB_53537| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
          Length = 379

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 364 VNISAILDSFSISYDKRVRPNYGGKP 441
           +NIS  L+     YDK++RPN GG P
Sbjct: 43  LNISIHLNQVLKKYDKKLRPNAGGLP 68


>SB_53778| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
          Length = 383

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +1

Query: 370 ISAILDSFSISYDKRVRPNYGGKP 441
           ++++LD+    YD R+RP++GG P
Sbjct: 7   MTSLLDNLIQGYDPRLRPDFGGDP 30


>SB_58314| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-36)
          Length = 444

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +1

Query: 367 NISAILDSFSISYDKRVRPNYGGKPNVIIEV 459
           N+S  +++    +DK+VRPN GG P V+++V
Sbjct: 47  NLSDFINNALKIHDKKVRPNAGGPP-VMVQV 76


>SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)
          Length = 1084

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 403 YDKRVRPNYGGKP-NVIIEVLKTSFIKF 483
           YD +VRPN GG+P  V  EV   SF +F
Sbjct: 780 YDIKVRPNDGGEPVEVTTEVKIVSFGEF 807


>SB_32445| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 367 NISAILDSFSISYDKRVRPNYGGKP 441
           NI+ +L      YD  +RP  GGKP
Sbjct: 54  NITLLLSEILRGYDSLLRPGLGGKP 78


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,003,780
Number of Sequences: 59808
Number of extensions: 200927
Number of successful extensions: 329
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)