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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021897X
         (484 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U33267-1|AAB37750.1|  497|Homo sapiens glycine receptor beta sub...    34   0.30 
BC032635-1|AAH32635.1|  497|Homo sapiens glycine receptor, beta ...    34   0.30 
AF094755-1|AAC71034.1|  497|Homo sapiens glycine receptor beta s...    34   0.30 
AF094754-1|AAC71033.1|  497|Homo sapiens glycine receptor beta s...    34   0.30 
S81944-1|AAB36480.1|  453|Homo sapiens gamma-aminobutyric acid t...    33   0.40 
BC099641-1|AAH99641.1|  453|Homo sapiens gamma-aminobutyric acid...    33   0.40 
BC099640-1|AAH99640.1|  453|Homo sapiens gamma-aminobutyric acid...    33   0.40 
BC096242-1|AAH96242.1|  453|Homo sapiens gamma-aminobutyric acid...    33   0.40 
BC096241-1|AAH96241.1|  453|Homo sapiens gamma-aminobutyric acid...    33   0.40 
AF053072-1|AAD19830.1|   74|Homo sapiens GABA subunit A receptor...    33   0.40 
U30461-1|AAB52519.1|  554|Homo sapiens GABAA receptor subunit al...    32   1.2  
S82769-1|AAB39369.1|  467|Homo sapiens GABAA receptor gamma 3 su...    32   1.2  
BC035055-1|AAH35055.1|  554|Homo sapiens gamma-aminobutyric acid...    32   1.2  
AF269144-1|AAF99698.1|  467|Homo sapiens GABAA receptor gamma 3 ...    32   1.2  
AF228458-1|AAF63215.1|  449|Homo sapiens GABAA receptor gamma 3 ...    32   1.2  
BC109211-1|AAI09212.1|  632|Homo sapiens gamma-aminobutyric acid...    31   2.8  
BC109210-1|AAI09211.1|  632|Homo sapiens gamma-aminobutyric acid...    31   2.8  
AF189259-1|AAF70380.1|  632|Homo sapiens GABA-A receptor theta s...    31   2.8  
AF144648-1|AAD51172.1|  627|Homo sapiens GABA-A receptor theta p...    31   2.8  

>U33267-1|AAB37750.1|  497|Homo sapiens glycine receptor beta
           subunit protein.
          Length = 497

 Score = 33.9 bits (74), Expect = 0.30
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +1

Query: 373 SAILDSFSISYDKRVRPNYGGKP-NVIIEVLKTSF 474
           S IL+   +SYD R+RPN+ G P +V++ +   SF
Sbjct: 57  SNILNRLLVSYDPRIRPNFKGIPVDVVVNIFINSF 91


>BC032635-1|AAH32635.1|  497|Homo sapiens glycine receptor, beta
           protein.
          Length = 497

 Score = 33.9 bits (74), Expect = 0.30
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +1

Query: 373 SAILDSFSISYDKRVRPNYGGKP-NVIIEVLKTSF 474
           S IL+   +SYD R+RPN+ G P +V++ +   SF
Sbjct: 57  SNILNRLLVSYDPRIRPNFKGIPVDVVVNIFINSF 91


>AF094755-1|AAC71034.1|  497|Homo sapiens glycine receptor beta
           subunit precursor protein.
          Length = 497

 Score = 33.9 bits (74), Expect = 0.30
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +1

Query: 373 SAILDSFSISYDKRVRPNYGGKP-NVIIEVLKTSF 474
           S IL+   +SYD R+RPN+ G P +V++ +   SF
Sbjct: 57  SNILNRLLVSYDPRIRPNFKGIPVDVVVNIFINSF 91


>AF094754-1|AAC71033.1|  497|Homo sapiens glycine receptor beta
           subunit precursor protein.
          Length = 497

 Score = 33.9 bits (74), Expect = 0.30
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +1

Query: 373 SAILDSFSISYDKRVRPNYGGKP-NVIIEVLKTSF 474
           S IL+   +SYD R+RPN+ G P +V++ +   SF
Sbjct: 57  SNILNRLLVSYDPRIRPNFKGIPVDVVVNIFINSF 91


>S81944-1|AAB36480.1|  453|Homo sapiens gamma-aminobutyric acid type
           A receptor alpha 6 subunit protein.
          Length = 453

 Score = 33.5 bits (73), Expect = 0.40
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 355 FGDVNISAILDSFSISYDKRVRPNYGGK-PNVIIEVLKTSF 474
           F   N+S ILD+    YD R+RP +GG    V  ++  TSF
Sbjct: 27  FYSENVSRILDNLLEGYDNRLRPGFGGAVTEVKTDIYVTSF 67


>BC099641-1|AAH99641.1|  453|Homo sapiens gamma-aminobutyric acid
           (GABA) A receptor, alpha 6 protein.
          Length = 453

 Score = 33.5 bits (73), Expect = 0.40
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 355 FGDVNISAILDSFSISYDKRVRPNYGGK-PNVIIEVLKTSF 474
           F   N+S ILD+    YD R+RP +GG    V  ++  TSF
Sbjct: 27  FYSENVSRILDNLLEGYDNRLRPGFGGAVTEVKTDIYVTSF 67


>BC099640-1|AAH99640.1|  453|Homo sapiens gamma-aminobutyric acid
           (GABA) A receptor, alpha 6 protein.
          Length = 453

 Score = 33.5 bits (73), Expect = 0.40
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 355 FGDVNISAILDSFSISYDKRVRPNYGGK-PNVIIEVLKTSF 474
           F   N+S ILD+    YD R+RP +GG    V  ++  TSF
Sbjct: 27  FYSENVSRILDNLLEGYDNRLRPGFGGAVTEVKTDIYVTSF 67


>BC096242-1|AAH96242.1|  453|Homo sapiens gamma-aminobutyric acid
           (GABA) A receptor, alpha 6 protein.
          Length = 453

 Score = 33.5 bits (73), Expect = 0.40
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 355 FGDVNISAILDSFSISYDKRVRPNYGGK-PNVIIEVLKTSF 474
           F   N+S ILD+    YD R+RP +GG    V  ++  TSF
Sbjct: 27  FYSENVSRILDNLLEGYDNRLRPGFGGAVTEVKTDIYVTSF 67


>BC096241-1|AAH96241.1|  453|Homo sapiens gamma-aminobutyric acid
           (GABA) A receptor, alpha 6 protein.
          Length = 453

 Score = 33.5 bits (73), Expect = 0.40
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 355 FGDVNISAILDSFSISYDKRVRPNYGGK-PNVIIEVLKTSF 474
           F   N+S ILD+    YD R+RP +GG    V  ++  TSF
Sbjct: 27  FYSENVSRILDNLLEGYDNRLRPGFGGAVTEVKTDIYVTSF 67


>AF053072-1|AAD19830.1|   74|Homo sapiens GABA subunit A receptor
           alpha 6 precursor protein.
          Length = 74

 Score = 33.5 bits (73), Expect = 0.40
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 355 FGDVNISAILDSFSISYDKRVRPNYGGK-PNVIIEVLKTSF 474
           F   N+S ILD+    YD R+RP +GG    V  ++  TSF
Sbjct: 27  FYSENVSRILDNLLEGYDNRLRPGFGGAVTEVKTDIYVTSF 67


>U30461-1|AAB52519.1|  554|Homo sapiens GABAA receptor subunit
           alpha4 protein.
          Length = 554

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 367 NISAILDSFSISYDKRVRPNYGGK-PNVIIEVLKTSF 474
           N + ILDS    YD R+RP +GG    V  ++  TSF
Sbjct: 47  NFTRILDSLLDGYDNRLRPGFGGPVTEVKTDIYVTSF 83


>S82769-1|AAB39369.1|  467|Homo sapiens GABAA receptor gamma 3
           subunit protein.
          Length = 467

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 361 DVNISAILDSFSISYDKRVRPNYGGKPNVI 450
           D +++ IL+     YDK++RP+ G KP VI
Sbjct: 44  DTDVTLILNKLLREYDKKLRPDIGIKPTVI 73


>BC035055-1|AAH35055.1|  554|Homo sapiens gamma-aminobutyric acid
           (GABA) A receptor, alpha 4 protein.
          Length = 554

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 367 NISAILDSFSISYDKRVRPNYGGK-PNVIIEVLKTSF 474
           N + ILDS    YD R+RP +GG    V  ++  TSF
Sbjct: 47  NFTRILDSLLDGYDNRLRPGFGGPVTEVKTDIYVTSF 83


>AF269144-1|AAF99698.1|  467|Homo sapiens GABAA receptor gamma 3
           subunit protein.
          Length = 467

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 361 DVNISAILDSFSISYDKRVRPNYGGKPNVI 450
           D +++ IL+     YDK++RP+ G KP VI
Sbjct: 44  DTDVTLILNKLLREYDKKLRPDIGIKPTVI 73


>AF228458-1|AAF63215.1|  449|Homo sapiens GABAA receptor gamma 3
           subunit protein.
          Length = 449

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 361 DVNISAILDSFSISYDKRVRPNYGGKPNVI 450
           D +++ IL+     YDK++RP+ G KP VI
Sbjct: 26  DTDVTLILNKLLREYDKKLRPDIGIKPTVI 55


>BC109211-1|AAI09212.1|  632|Homo sapiens gamma-aminobutyric acid
           (GABA) receptor, theta protein.
          Length = 632

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 370 ISAILDSFSISYDKRVRPNYGGKP-NVIIEVLKTS 471
           +  ILD     YD R+RPN+GG P  V I +  TS
Sbjct: 59  VQKILDRVLSRYDVRLRPNFGGAPVPVRISIYVTS 93


>BC109210-1|AAI09211.1|  632|Homo sapiens gamma-aminobutyric acid
           (GABA) receptor, theta protein.
          Length = 632

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 370 ISAILDSFSISYDKRVRPNYGGKP-NVIIEVLKTS 471
           +  ILD     YD R+RPN+GG P  V I +  TS
Sbjct: 59  VQKILDRVLSRYDVRLRPNFGGAPVPVRISIYVTS 93


>AF189259-1|AAF70380.1|  632|Homo sapiens GABA-A receptor theta
           subunit protein.
          Length = 632

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 370 ISAILDSFSISYDKRVRPNYGGKP-NVIIEVLKTS 471
           +  ILD     YD R+RPN+GG P  V I +  TS
Sbjct: 59  VQKILDRVLSRYDVRLRPNFGGAPVPVRISIYVTS 93


>AF144648-1|AAD51172.1|  627|Homo sapiens GABA-A receptor theta
           protein.
          Length = 627

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 370 ISAILDSFSISYDKRVRPNYGGKP-NVIIEVLKTS 471
           +  ILD     YD R+RPN+GG P  V I +  TS
Sbjct: 54  VQKILDRVLSRYDVRLRPNFGGAPVPVRISIYVTS 88


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,863,238
Number of Sequences: 237096
Number of extensions: 874048
Number of successful extensions: 1559
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1559
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4327667848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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