Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021897X
(484 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U33267-1|AAB37750.1| 497|Homo sapiens glycine receptor beta sub... 34 0.30
BC032635-1|AAH32635.1| 497|Homo sapiens glycine receptor, beta ... 34 0.30
AF094755-1|AAC71034.1| 497|Homo sapiens glycine receptor beta s... 34 0.30
AF094754-1|AAC71033.1| 497|Homo sapiens glycine receptor beta s... 34 0.30
S81944-1|AAB36480.1| 453|Homo sapiens gamma-aminobutyric acid t... 33 0.40
BC099641-1|AAH99641.1| 453|Homo sapiens gamma-aminobutyric acid... 33 0.40
BC099640-1|AAH99640.1| 453|Homo sapiens gamma-aminobutyric acid... 33 0.40
BC096242-1|AAH96242.1| 453|Homo sapiens gamma-aminobutyric acid... 33 0.40
BC096241-1|AAH96241.1| 453|Homo sapiens gamma-aminobutyric acid... 33 0.40
AF053072-1|AAD19830.1| 74|Homo sapiens GABA subunit A receptor... 33 0.40
U30461-1|AAB52519.1| 554|Homo sapiens GABAA receptor subunit al... 32 1.2
S82769-1|AAB39369.1| 467|Homo sapiens GABAA receptor gamma 3 su... 32 1.2
BC035055-1|AAH35055.1| 554|Homo sapiens gamma-aminobutyric acid... 32 1.2
AF269144-1|AAF99698.1| 467|Homo sapiens GABAA receptor gamma 3 ... 32 1.2
AF228458-1|AAF63215.1| 449|Homo sapiens GABAA receptor gamma 3 ... 32 1.2
BC109211-1|AAI09212.1| 632|Homo sapiens gamma-aminobutyric acid... 31 2.8
BC109210-1|AAI09211.1| 632|Homo sapiens gamma-aminobutyric acid... 31 2.8
AF189259-1|AAF70380.1| 632|Homo sapiens GABA-A receptor theta s... 31 2.8
AF144648-1|AAD51172.1| 627|Homo sapiens GABA-A receptor theta p... 31 2.8
>U33267-1|AAB37750.1| 497|Homo sapiens glycine receptor beta
subunit protein.
Length = 497
Score = 33.9 bits (74), Expect = 0.30
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +1
Query: 373 SAILDSFSISYDKRVRPNYGGKP-NVIIEVLKTSF 474
S IL+ +SYD R+RPN+ G P +V++ + SF
Sbjct: 57 SNILNRLLVSYDPRIRPNFKGIPVDVVVNIFINSF 91
>BC032635-1|AAH32635.1| 497|Homo sapiens glycine receptor, beta
protein.
Length = 497
Score = 33.9 bits (74), Expect = 0.30
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +1
Query: 373 SAILDSFSISYDKRVRPNYGGKP-NVIIEVLKTSF 474
S IL+ +SYD R+RPN+ G P +V++ + SF
Sbjct: 57 SNILNRLLVSYDPRIRPNFKGIPVDVVVNIFINSF 91
>AF094755-1|AAC71034.1| 497|Homo sapiens glycine receptor beta
subunit precursor protein.
Length = 497
Score = 33.9 bits (74), Expect = 0.30
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +1
Query: 373 SAILDSFSISYDKRVRPNYGGKP-NVIIEVLKTSF 474
S IL+ +SYD R+RPN+ G P +V++ + SF
Sbjct: 57 SNILNRLLVSYDPRIRPNFKGIPVDVVVNIFINSF 91
>AF094754-1|AAC71033.1| 497|Homo sapiens glycine receptor beta
subunit precursor protein.
Length = 497
Score = 33.9 bits (74), Expect = 0.30
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +1
Query: 373 SAILDSFSISYDKRVRPNYGGKP-NVIIEVLKTSF 474
S IL+ +SYD R+RPN+ G P +V++ + SF
Sbjct: 57 SNILNRLLVSYDPRIRPNFKGIPVDVVVNIFINSF 91
>S81944-1|AAB36480.1| 453|Homo sapiens gamma-aminobutyric acid type
A receptor alpha 6 subunit protein.
Length = 453
Score = 33.5 bits (73), Expect = 0.40
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 355 FGDVNISAILDSFSISYDKRVRPNYGGK-PNVIIEVLKTSF 474
F N+S ILD+ YD R+RP +GG V ++ TSF
Sbjct: 27 FYSENVSRILDNLLEGYDNRLRPGFGGAVTEVKTDIYVTSF 67
>BC099641-1|AAH99641.1| 453|Homo sapiens gamma-aminobutyric acid
(GABA) A receptor, alpha 6 protein.
Length = 453
Score = 33.5 bits (73), Expect = 0.40
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 355 FGDVNISAILDSFSISYDKRVRPNYGGK-PNVIIEVLKTSF 474
F N+S ILD+ YD R+RP +GG V ++ TSF
Sbjct: 27 FYSENVSRILDNLLEGYDNRLRPGFGGAVTEVKTDIYVTSF 67
>BC099640-1|AAH99640.1| 453|Homo sapiens gamma-aminobutyric acid
(GABA) A receptor, alpha 6 protein.
Length = 453
Score = 33.5 bits (73), Expect = 0.40
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 355 FGDVNISAILDSFSISYDKRVRPNYGGK-PNVIIEVLKTSF 474
F N+S ILD+ YD R+RP +GG V ++ TSF
Sbjct: 27 FYSENVSRILDNLLEGYDNRLRPGFGGAVTEVKTDIYVTSF 67
>BC096242-1|AAH96242.1| 453|Homo sapiens gamma-aminobutyric acid
(GABA) A receptor, alpha 6 protein.
Length = 453
Score = 33.5 bits (73), Expect = 0.40
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 355 FGDVNISAILDSFSISYDKRVRPNYGGK-PNVIIEVLKTSF 474
F N+S ILD+ YD R+RP +GG V ++ TSF
Sbjct: 27 FYSENVSRILDNLLEGYDNRLRPGFGGAVTEVKTDIYVTSF 67
>BC096241-1|AAH96241.1| 453|Homo sapiens gamma-aminobutyric acid
(GABA) A receptor, alpha 6 protein.
Length = 453
Score = 33.5 bits (73), Expect = 0.40
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 355 FGDVNISAILDSFSISYDKRVRPNYGGK-PNVIIEVLKTSF 474
F N+S ILD+ YD R+RP +GG V ++ TSF
Sbjct: 27 FYSENVSRILDNLLEGYDNRLRPGFGGAVTEVKTDIYVTSF 67
>AF053072-1|AAD19830.1| 74|Homo sapiens GABA subunit A receptor
alpha 6 precursor protein.
Length = 74
Score = 33.5 bits (73), Expect = 0.40
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 355 FGDVNISAILDSFSISYDKRVRPNYGGK-PNVIIEVLKTSF 474
F N+S ILD+ YD R+RP +GG V ++ TSF
Sbjct: 27 FYSENVSRILDNLLEGYDNRLRPGFGGAVTEVKTDIYVTSF 67
>U30461-1|AAB52519.1| 554|Homo sapiens GABAA receptor subunit
alpha4 protein.
Length = 554
Score = 31.9 bits (69), Expect = 1.2
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 367 NISAILDSFSISYDKRVRPNYGGK-PNVIIEVLKTSF 474
N + ILDS YD R+RP +GG V ++ TSF
Sbjct: 47 NFTRILDSLLDGYDNRLRPGFGGPVTEVKTDIYVTSF 83
>S82769-1|AAB39369.1| 467|Homo sapiens GABAA receptor gamma 3
subunit protein.
Length = 467
Score = 31.9 bits (69), Expect = 1.2
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 361 DVNISAILDSFSISYDKRVRPNYGGKPNVI 450
D +++ IL+ YDK++RP+ G KP VI
Sbjct: 44 DTDVTLILNKLLREYDKKLRPDIGIKPTVI 73
>BC035055-1|AAH35055.1| 554|Homo sapiens gamma-aminobutyric acid
(GABA) A receptor, alpha 4 protein.
Length = 554
Score = 31.9 bits (69), Expect = 1.2
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 367 NISAILDSFSISYDKRVRPNYGGK-PNVIIEVLKTSF 474
N + ILDS YD R+RP +GG V ++ TSF
Sbjct: 47 NFTRILDSLLDGYDNRLRPGFGGPVTEVKTDIYVTSF 83
>AF269144-1|AAF99698.1| 467|Homo sapiens GABAA receptor gamma 3
subunit protein.
Length = 467
Score = 31.9 bits (69), Expect = 1.2
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 361 DVNISAILDSFSISYDKRVRPNYGGKPNVI 450
D +++ IL+ YDK++RP+ G KP VI
Sbjct: 44 DTDVTLILNKLLREYDKKLRPDIGIKPTVI 73
>AF228458-1|AAF63215.1| 449|Homo sapiens GABAA receptor gamma 3
subunit protein.
Length = 449
Score = 31.9 bits (69), Expect = 1.2
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 361 DVNISAILDSFSISYDKRVRPNYGGKPNVI 450
D +++ IL+ YDK++RP+ G KP VI
Sbjct: 26 DTDVTLILNKLLREYDKKLRPDIGIKPTVI 55
>BC109211-1|AAI09212.1| 632|Homo sapiens gamma-aminobutyric acid
(GABA) receptor, theta protein.
Length = 632
Score = 30.7 bits (66), Expect = 2.8
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 370 ISAILDSFSISYDKRVRPNYGGKP-NVIIEVLKTS 471
+ ILD YD R+RPN+GG P V I + TS
Sbjct: 59 VQKILDRVLSRYDVRLRPNFGGAPVPVRISIYVTS 93
>BC109210-1|AAI09211.1| 632|Homo sapiens gamma-aminobutyric acid
(GABA) receptor, theta protein.
Length = 632
Score = 30.7 bits (66), Expect = 2.8
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 370 ISAILDSFSISYDKRVRPNYGGKP-NVIIEVLKTS 471
+ ILD YD R+RPN+GG P V I + TS
Sbjct: 59 VQKILDRVLSRYDVRLRPNFGGAPVPVRISIYVTS 93
>AF189259-1|AAF70380.1| 632|Homo sapiens GABA-A receptor theta
subunit protein.
Length = 632
Score = 30.7 bits (66), Expect = 2.8
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 370 ISAILDSFSISYDKRVRPNYGGKP-NVIIEVLKTS 471
+ ILD YD R+RPN+GG P V I + TS
Sbjct: 59 VQKILDRVLSRYDVRLRPNFGGAPVPVRISIYVTS 93
>AF144648-1|AAD51172.1| 627|Homo sapiens GABA-A receptor theta
protein.
Length = 627
Score = 30.7 bits (66), Expect = 2.8
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 370 ISAILDSFSISYDKRVRPNYGGKP-NVIIEVLKTS 471
+ ILD YD R+RPN+GG P V I + TS
Sbjct: 54 VQKILDRVLSRYDVRLRPNFGGAPVPVRISIYVTS 88
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,863,238
Number of Sequences: 237096
Number of extensions: 874048
Number of successful extensions: 1559
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1559
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4327667848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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