Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021897X
(484 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U02042-1|AAA19249.1| 606|Drosophila melanogaster GABA receptor ... 63 2e-10
M69057-3|AAA28558.1| 595|Drosophila melanogaster GABA-alpha rec... 62 3e-10
M69057-2|AAA28557.1| 601|Drosophila melanogaster GABA-alpha rec... 62 3e-10
M69057-1|AAA28556.1| 606|Drosophila melanogaster GABA-alpha rec... 62 3e-10
AY051418-1|AAK92842.1| 454|Drosophila melanogaster GH09619p pro... 62 3e-10
AE014296-1598|AAN11989.1| 585|Drosophila melanogaster CG10537-P... 62 3e-10
AE014296-1597|AAF50311.1| 606|Drosophila melanogaster CG10537-P... 62 3e-10
AE014296-1596|AAN11988.1| 606|Drosophila melanogaster CG10537-P... 62 3e-10
X78349-1|CAA55144.1| 686|Drosophila melanogaster Grd protein. 33 0.20
AE014296-2969|AAF49298.2| 686|Drosophila melanogaster CG7446-PA... 33 0.20
S61115-1|AAB26672.1| 44|Drosophila melanogaster gamma-aminobut... 33 0.27
S61113-1|AAB26669.1| 44|Drosophila melanogaster gamma-aminobut... 33 0.27
S62717-1|AAB27090.1| 496|Drosophila melanogaster LCCH3 protein. 29 2.5
L17436-1|AAA28559.1| 496|Drosophila melanogaster GABA receptor ... 29 2.5
AY060660-1|AAL28208.1| 496|Drosophila melanogaster GH08705p pro... 29 2.5
AE014298-2288|AAS65370.1| 496|Drosophila melanogaster CG17336-P... 29 2.5
AE014298-2287|AAN09377.1| 496|Drosophila melanogaster CG17336-P... 29 2.5
AE014298-2286|AAF48540.1| 496|Drosophila melanogaster CG17336-P... 29 2.5
>U02042-1|AAA19249.1| 606|Drosophila melanogaster GABA receptor
protein.
Length = 606
Score = 62.9 bits (146), Expect = 2e-10
Identities = 31/42 (73%), Positives = 34/42 (80%)
Frame = +1
Query: 352 MFGDVNISAILDSFSISYDKRVRPNYGGKPNVIIEVLKTSFI 477
M GDVNISAILDSFSISYDKRVRPNYGG P +EV T ++
Sbjct: 53 MLGDVNISAILDSFSISYDKRVRPNYGGPP---VEVGVTMYV 91
>M69057-3|AAA28558.1| 595|Drosophila melanogaster GABA-alpha
receptor protein.
Length = 595
Score = 62.5 bits (145), Expect = 3e-10
Identities = 30/42 (71%), Positives = 34/42 (80%)
Frame = +1
Query: 352 MFGDVNISAILDSFSISYDKRVRPNYGGKPNVIIEVLKTSFI 477
M GDVNISAILDSFS+SYDKRVRPNYGG P +EV T ++
Sbjct: 42 MLGDVNISAILDSFSVSYDKRVRPNYGGPP---VEVGVTMYV 80
>M69057-2|AAA28557.1| 601|Drosophila melanogaster GABA-alpha
receptor protein.
Length = 601
Score = 62.5 bits (145), Expect = 3e-10
Identities = 30/42 (71%), Positives = 34/42 (80%)
Frame = +1
Query: 352 MFGDVNISAILDSFSISYDKRVRPNYGGKPNVIIEVLKTSFI 477
M GDVNISAILDSFS+SYDKRVRPNYGG P +EV T ++
Sbjct: 48 MLGDVNISAILDSFSVSYDKRVRPNYGGPP---VEVGVTMYV 86
>M69057-1|AAA28556.1| 606|Drosophila melanogaster GABA-alpha
receptor protein.
Length = 606
Score = 62.5 bits (145), Expect = 3e-10
Identities = 30/42 (71%), Positives = 34/42 (80%)
Frame = +1
Query: 352 MFGDVNISAILDSFSISYDKRVRPNYGGKPNVIIEVLKTSFI 477
M GDVNISAILDSFS+SYDKRVRPNYGG P +EV T ++
Sbjct: 53 MLGDVNISAILDSFSVSYDKRVRPNYGGPP---VEVGVTMYV 91
>AY051418-1|AAK92842.1| 454|Drosophila melanogaster GH09619p
protein.
Length = 454
Score = 62.5 bits (145), Expect = 3e-10
Identities = 30/42 (71%), Positives = 34/42 (80%)
Frame = +1
Query: 352 MFGDVNISAILDSFSISYDKRVRPNYGGKPNVIIEVLKTSFI 477
M GDVNISAILDSFS+SYDKRVRPNYGG P +EV T ++
Sbjct: 53 MLGDVNISAILDSFSVSYDKRVRPNYGGPP---VEVGVTMYV 91
>AE014296-1598|AAN11989.1| 585|Drosophila melanogaster CG10537-PB,
isoform B protein.
Length = 585
Score = 62.5 bits (145), Expect = 3e-10
Identities = 30/42 (71%), Positives = 34/42 (80%)
Frame = +1
Query: 352 MFGDVNISAILDSFSISYDKRVRPNYGGKPNVIIEVLKTSFI 477
M GDVNISAILDSFS+SYDKRVRPNYGG P +EV T ++
Sbjct: 53 MLGDVNISAILDSFSVSYDKRVRPNYGGPP---VEVGVTMYV 91
>AE014296-1597|AAF50311.1| 606|Drosophila melanogaster CG10537-PA,
isoform A protein.
Length = 606
Score = 62.5 bits (145), Expect = 3e-10
Identities = 30/42 (71%), Positives = 34/42 (80%)
Frame = +1
Query: 352 MFGDVNISAILDSFSISYDKRVRPNYGGKPNVIIEVLKTSFI 477
M GDVNISAILDSFS+SYDKRVRPNYGG P +EV T ++
Sbjct: 53 MLGDVNISAILDSFSVSYDKRVRPNYGGPP---VEVGVTMYV 91
>AE014296-1596|AAN11988.1| 606|Drosophila melanogaster CG10537-PC,
isoform C protein.
Length = 606
Score = 62.5 bits (145), Expect = 3e-10
Identities = 30/42 (71%), Positives = 34/42 (80%)
Frame = +1
Query: 352 MFGDVNISAILDSFSISYDKRVRPNYGGKPNVIIEVLKTSFI 477
M GDVNISAILDSFS+SYDKRVRPNYGG P +EV T ++
Sbjct: 53 MLGDVNISAILDSFSVSYDKRVRPNYGGPP---VEVGVTMYV 91
>X78349-1|CAA55144.1| 686|Drosophila melanogaster Grd protein.
Length = 686
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 367 NISAILDSFSISYDKRVRPNYGGKPNVI 450
NIS +LD+ YD +RP++GG P I
Sbjct: 108 NISELLDNLLRGYDNSIRPDFGGPPATI 135
>AE014296-2969|AAF49298.2| 686|Drosophila melanogaster CG7446-PA
protein.
Length = 686
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 367 NISAILDSFSISYDKRVRPNYGGKPNVI 450
NIS +LD+ YD +RP++GG P I
Sbjct: 108 NISELLDNLLRGYDNSIRPDFGGPPATI 135
>S61115-1|AAB26672.1| 44|Drosophila melanogaster
gamma-aminobutyric acid receptor protein.
Length = 44
Score = 32.7 bits (71), Expect = 0.27
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +1
Query: 403 YDKRVRPNYGGKPNVIIEVLKTSFI 477
YDKRVRPNYGG P +EV T ++
Sbjct: 1 YDKRVRPNYGGPP---VEVGVTMYV 22
>S61113-1|AAB26669.1| 44|Drosophila melanogaster
gamma-aminobutyric acid receptor protein.
Length = 44
Score = 32.7 bits (71), Expect = 0.27
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +1
Query: 403 YDKRVRPNYGGKPNVIIEVLKTSFI 477
YDKRVRPNYGG P +EV T ++
Sbjct: 1 YDKRVRPNYGGPP---VEVGVTMYV 22
>S62717-1|AAB27090.1| 496|Drosophila melanogaster LCCH3 protein.
Length = 496
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 367 NISAILDSFSISYDKRVRPNYGGKP 441
N++ + + YD R+RPN+GG+P
Sbjct: 39 NVTQTISNILQGYDIRLRPNFGGEP 63
>L17436-1|AAA28559.1| 496|Drosophila melanogaster GABA receptor
beta subunit protein.
Length = 496
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 367 NISAILDSFSISYDKRVRPNYGGKP 441
N++ + + YD R+RPN+GG+P
Sbjct: 39 NVTQTISNILQGYDIRLRPNFGGEP 63
>AY060660-1|AAL28208.1| 496|Drosophila melanogaster GH08705p
protein.
Length = 496
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 367 NISAILDSFSISYDKRVRPNYGGKP 441
N++ + + YD R+RPN+GG+P
Sbjct: 39 NVTQTISNILQGYDIRLRPNFGGEP 63
>AE014298-2288|AAS65370.1| 496|Drosophila melanogaster CG17336-PC,
isoform C protein.
Length = 496
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 367 NISAILDSFSISYDKRVRPNYGGKP 441
N++ + + YD R+RPN+GG+P
Sbjct: 39 NVTQTISNILQGYDIRLRPNFGGEP 63
>AE014298-2287|AAN09377.1| 496|Drosophila melanogaster CG17336-PB,
isoform B protein.
Length = 496
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 367 NISAILDSFSISYDKRVRPNYGGKP 441
N++ + + YD R+RPN+GG+P
Sbjct: 39 NVTQTISNILQGYDIRLRPNFGGEP 63
>AE014298-2286|AAF48540.1| 496|Drosophila melanogaster CG17336-PA,
isoform A protein.
Length = 496
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 367 NISAILDSFSISYDKRVRPNYGGKP 441
N++ + + YD R+RPN+GG+P
Sbjct: 39 NVTQTISNILQGYDIRLRPNFGGEP 63
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,472,908
Number of Sequences: 53049
Number of extensions: 296670
Number of successful extensions: 379
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1684597257
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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