Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021897X
         (484 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-1|AAA81158.3|  459|Caenorhabditis elegans Hypothetical pr...    38   0.005
Z50016-6|CAC42350.1|  448|Caenorhabditis elegans Hypothetical pr...    31   0.58 
Z50016-5|CAC42349.1|  506|Caenorhabditis elegans Hypothetical pr...    31   0.58 
Z50016-4|CAC42348.1|  475|Caenorhabditis elegans Hypothetical pr...    31   0.58 
Z50016-3|CAC42347.1|  487|Caenorhabditis elegans Hypothetical pr...    31   0.58 
Z50016-2|CAC42346.1|  487|Caenorhabditis elegans Hypothetical pr...    31   0.58 
Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical pr...    31   0.58 
AF151644-1|AAD42386.1|  448|Caenorhabditis elegans ionotropic GA...    31   0.58 
AF151643-1|AAD42385.1|  506|Caenorhabditis elegans ionotropic GA...    31   0.58 
AF151642-1|AAD42384.1|  475|Caenorhabditis elegans ionotropic GA...    31   0.58 
AF151641-1|AAD42383.1|  487|Caenorhabditis elegans ionotropic GA...    31   0.58 
AF151640-1|AAD42382.1|  487|Caenorhabditis elegans ionotropic GA...    31   0.58 
Z93397-1|CAB07719.3|  550|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF498370-1|AAN65376.1|  550|Caenorhabditis elegans GABA-A recept...    29   2.3  

>U40187-1|AAA81158.3|  459|Caenorhabditis elegans Hypothetical
           protein F11H8.2 protein.
          Length = 459

 Score = 37.5 bits (83), Expect = 0.005
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +1

Query: 367 NISAILDSFSISYDKRVRPNYGGKP 441
           N++ +LD    S+D+R+RPNYGG P
Sbjct: 50  NVTRLLDKLIASHDRRIRPNYGGPP 74


>Z50016-6|CAC42350.1|  448|Caenorhabditis elegans Hypothetical
           protein T21C12.1f protein.
          Length = 448

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
 Frame = +1

Query: 370 ISAILDSFS--ISYDKRVRPNYGGKP 441
           +S++LD  +   +YDKR+RP YG KP
Sbjct: 34  LSSVLDRLTNRTTYDKRLRPRYGEKP 59


>Z50016-5|CAC42349.1|  506|Caenorhabditis elegans Hypothetical
           protein T21C12.1e protein.
          Length = 506

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
 Frame = +1

Query: 370 ISAILDSFS--ISYDKRVRPNYGGKP 441
           +S++LD  +   +YDKR+RP YG KP
Sbjct: 34  LSSVLDRLTNRTTYDKRLRPRYGEKP 59


>Z50016-4|CAC42348.1|  475|Caenorhabditis elegans Hypothetical
           protein T21C12.1d protein.
          Length = 475

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
 Frame = +1

Query: 370 ISAILDSFS--ISYDKRVRPNYGGKP 441
           +S++LD  +   +YDKR+RP YG KP
Sbjct: 34  LSSVLDRLTNRTTYDKRLRPRYGEKP 59


>Z50016-3|CAC42347.1|  487|Caenorhabditis elegans Hypothetical
           protein T21C12.1c protein.
          Length = 487

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
 Frame = +1

Query: 370 ISAILDSFS--ISYDKRVRPNYGGKP 441
           +S++LD  +   +YDKR+RP YG KP
Sbjct: 34  LSSVLDRLTNRTTYDKRLRPRYGEKP 59


>Z50016-2|CAC42346.1|  487|Caenorhabditis elegans Hypothetical
           protein T21C12.1b protein.
          Length = 487

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
 Frame = +1

Query: 370 ISAILDSFS--ISYDKRVRPNYGGKP 441
           +S++LD  +   +YDKR+RP YG KP
Sbjct: 34  LSSVLDRLTNRTTYDKRLRPRYGEKP 59


>Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical
           protein T21C12.1a protein.
          Length = 1106

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
 Frame = +1

Query: 370 ISAILDSFS--ISYDKRVRPNYGGKP 441
           +S++LD  +   +YDKR+RP YG KP
Sbjct: 34  LSSVLDRLTNRTTYDKRLRPRYGEKP 59


>AF151644-1|AAD42386.1|  448|Caenorhabditis elegans ionotropic GABA
           receptor subunitUNC-49C protein.
          Length = 448

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
 Frame = +1

Query: 370 ISAILDSFS--ISYDKRVRPNYGGKP 441
           +S++LD  +   +YDKR+RP YG KP
Sbjct: 34  LSSVLDRLTNRTTYDKRLRPRYGEKP 59


>AF151643-1|AAD42385.1|  506|Caenorhabditis elegans ionotropic GABA
           receptor subunitUNC-49B.3 protein.
          Length = 506

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
 Frame = +1

Query: 370 ISAILDSFS--ISYDKRVRPNYGGKP 441
           +S++LD  +   +YDKR+RP YG KP
Sbjct: 34  LSSVLDRLTNRTTYDKRLRPRYGEKP 59


>AF151642-1|AAD42384.1|  475|Caenorhabditis elegans ionotropic GABA
           receptor subunitUNC-49B.2 protein.
          Length = 475

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
 Frame = +1

Query: 370 ISAILDSFS--ISYDKRVRPNYGGKP 441
           +S++LD  +   +YDKR+RP YG KP
Sbjct: 34  LSSVLDRLTNRTTYDKRLRPRYGEKP 59


>AF151641-1|AAD42383.1|  487|Caenorhabditis elegans ionotropic GABA
           receptor subunitUNC-49B.1 protein.
          Length = 487

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
 Frame = +1

Query: 370 ISAILDSFS--ISYDKRVRPNYGGKP 441
           +S++LD  +   +YDKR+RP YG KP
Sbjct: 34  LSSVLDRLTNRTTYDKRLRPRYGEKP 59


>AF151640-1|AAD42382.1|  487|Caenorhabditis elegans ionotropic GABA
           receptor subunitUNC-49A protein.
          Length = 487

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
 Frame = +1

Query: 370 ISAILDSFS--ISYDKRVRPNYGGKP 441
           +S++LD  +   +YDKR+RP YG KP
Sbjct: 34  LSSVLDRLTNRTTYDKRLRPRYGEKP 59


>Z93397-1|CAB07719.3|  550|Caenorhabditis elegans Hypothetical
           protein ZC482.1 protein.
          Length = 550

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 367 NISAILDSFSISYDKRVRPNYGGKPNVI-IEVLKTSF 474
           N S++L    + YD R+RP +GG   ++ ++++  SF
Sbjct: 53  NASSLLSDLLLDYDIRLRPGFGGDALLLTMDIIIASF 89


>AF498370-1|AAN65376.1|  550|Caenorhabditis elegans GABA-A receptor
           subunit protein.
          Length = 550

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 367 NISAILDSFSISYDKRVRPNYGGKPNVI-IEVLKTSF 474
           N S++L    + YD R+RP +GG   ++ ++++  SF
Sbjct: 53  NASSLLSDLLLDYDIRLRPGFGGDALLLTMDIIIASF 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,750,289
Number of Sequences: 27780
Number of extensions: 144033
Number of successful extensions: 236
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)