Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021897X
         (484 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    60   1e-11
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    60   1e-11
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    33   0.002
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    29   0.026
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   6.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.1  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 60.1 bits (139), Expect = 1e-11
 Identities = 29/42 (69%), Positives = 33/42 (78%)
 Frame = +1

Query: 352 MFGDVNISAILDSFSISYDKRVRPNYGGKPNVIIEVLKTSFI 477
           M  DVNISAILDSFS+SYDKRVRPNYGG P   +EV  T ++
Sbjct: 6   MLNDVNISAILDSFSVSYDKRVRPNYGGPP---VEVGVTMYV 44


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 60.1 bits (139), Expect = 1e-11
 Identities = 29/42 (69%), Positives = 33/42 (78%)
 Frame = +1

Query: 352 MFGDVNISAILDSFSISYDKRVRPNYGGKPNVIIEVLKTSFI 477
           M  DVNISAILDSFS+SYDKRVRPNYGG P   +EV  T ++
Sbjct: 6   MLNDVNISAILDSFSVSYDKRVRPNYGGPP---VEVGVTMYV 44


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 33.1 bits (72), Expect = 0.002
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 367 NISAILDSFSISYDKRVRPNYGGKPNVI 450
           NIS +LD+    YD  VRP++GG P  +
Sbjct: 5   NISELLDNLLRGYDNSVRPDFGGPPATV 32


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 29.1 bits (62), Expect = 0.026
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +1

Query: 370 ISAILDSFSISYDKRVRPNYGGKPNVI 450
           IS ILD     YD R+RPN+GG+P ++
Sbjct: 41  ISRILDG----YDIRLRPNFGGEPLLV 63


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -2

Query: 276 DARRSCPAAPRLRVLALTRVAIDRAPPATRARL 178
           D  +SCP+ P       T+   +R PP    R+
Sbjct: 613 DTNQSCPSPPVTTKRDGTQETEERLPPLPPKRI 645


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 379 ILDSFSISYDKRVRPN 426
           +LD+    YD R+RP+
Sbjct: 35  VLDNILGGYDARIRPS 50


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 379 ILDSFSISYDKRVRPN 426
           +LD+    YD R+RP+
Sbjct: 35  VLDNILGGYDARIRPS 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,370
Number of Sequences: 438
Number of extensions: 1776
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)