Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021896
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    49   5e-07
SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ...    27   2.2  
SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|c...    26   3.8  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    25   8.7  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    25   8.7  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 48.8 bits (111), Expect = 5e-07
 Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
 Frame = +2

Query: 269 DMRREEERLKTFDQ--WPVTFLTPEQLARNGFYYLG--------RGDEVCCAFCKVEIMR 418
           +M    +RL TF +  WP    TPE LA  GFYY          R D V C  C      
Sbjct: 18  EMCNYSKRLDTFQKKKWPRAKPTPETLATVGFYYNPISESNSEERLDNVTCYMCTKSFYD 77

Query: 419 WVEGDDPAADHRRWAPQCPF 478
           W + DDP  +H   +P CP+
Sbjct: 78  WEDDDDPLKEHITHSPSCPW 97



 Score = 36.3 bits (80), Expect = 0.003
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = +2

Query: 332 PEQLARNGFYY---LGRGDEVCCAFCKVEIMRWVEGDDPAADHRRWAPQCPF 478
           P  +A +GF Y       D   C +C + +  W   DDP  +H+R    C F
Sbjct: 141 PSVMAASGFVYNPTADAKDAAHCLYCDINLHDWEPDDDPYTEHKRRRADCVF 192


>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 400

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/58 (24%), Positives = 28/58 (48%)
 Frame = -3

Query: 508 PSVGIHLFSYKGTLGRPSPMIGSRIVAFDPPHDFYLTESTAHLVAATEVVESVAGQLF 335
           P+V  ++++Y G+      ++ S I   +P   +Y+     H   + +   SVA Q+F
Sbjct: 105 PTVRDNVYAYLGSQRNTKVVLTSHIDTVNPFLPYYIEGDKIHGRGSCDAKSSVAAQIF 162


>SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -3

Query: 418 PHDFYLTESTAHLVAATEVVESVAGQLFRRQKRNGPLIKCFQTFLFT 278
           P+D Y+T   +H++ A++ +  +   L    + N P  KC+++  FT
Sbjct: 88  PNDSYMTGWKSHVLGASKEILDIYSVLCTLNEFNNP--KCYRSNGFT 132


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 320 TFLTPEQLARNGFYYLGRGDEV 385
           TFL  E+LA+N    L  GDE+
Sbjct: 109 TFLNFERLAKNSRTILSNGDEI 130


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
 Frame = +2

Query: 245 IQLLPDMPDMRREEERLKTFDQWPVTFLTPEQLA-----RNGFYYLGRGD 379
           I +LP+   +  EE R+  FD++        +L      R G+Y +G+ +
Sbjct: 576 ISILPEFAALHSEEHRMAAFDKYIRRLREKRELEKQYQNRRGYYDVGKDE 625


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,037,371
Number of Sequences: 5004
Number of extensions: 37116
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)