Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021896
         (510 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0027 - 225670-225870,225989-226126,226315-226392,226523-22...    31   0.71 
11_01_0027 - 199196-199396,199514-199651,200207-200284,200419-20...    31   0.71 
07_03_1782 + 29477748-29478169,29478257-29478413,29478518-294786...    28   3.8  
05_05_0204 + 23241555-23241696,23241770-23242910,23243058-23243583     27   6.6  
03_02_0639 - 10047105-10047204,10047315-10047495,10049375-100494...    27   8.8  

>12_01_0027 -
           225670-225870,225989-226126,226315-226392,226523-226708,
           226853-226945,227797-227863,228660-228964
          Length = 355

 Score = 30.7 bits (66), Expect = 0.71
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 385 HLVAATEVVESVAGQLFRRQKRNGPL-IKCFQTFLFTTHVGH 263
           HLV AT+    V G+ +R  +++GPL +  F   L +  V H
Sbjct: 285 HLVEATKAARPVLGRYYREPEKSGPLPLHLFGVLLRSLRVDH 326


>11_01_0027 -
           199196-199396,199514-199651,200207-200284,200419-200604,
           200754-200846,201665-201731,202374-202675
          Length = 354

 Score = 30.7 bits (66), Expect = 0.71
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 385 HLVAATEVVESVAGQLFRRQKRNGPL-IKCFQTFLFTTHVGH 263
           HLV AT+    V G+ +R  +++GPL +  F   L +  V H
Sbjct: 284 HLVEATKAARPVLGRYYREPEKSGPLPLHLFGVLLRSLRVDH 325


>07_03_1782 +
           29477748-29478169,29478257-29478413,29478518-29478610,
           29478753-29478938,29479107-29479187,29479788-29479925,
           29480044-29480208
          Length = 413

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 385 HLVAATEVVESVAGQLFRRQKRNGP 311
           HL+ ATE  + V G+ +R   ++GP
Sbjct: 355 HLIEATEAAKGVMGKYYREPDKSGP 379


>05_05_0204 + 23241555-23241696,23241770-23242910,23243058-23243583
          Length = 602

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = -3

Query: 457 SPMIGSRIVAFDPPHDFYLTESTAHLVAATEVVESVA----GQLFRRQ 326
           +PM G+  +  DP  D +L  STA +   T  + SVA    G+LF R+
Sbjct: 444 APMAGAFFLLLDP-RDMFLYTSTAVVGTCTGAITSVAVSATGELFGRK 490


>03_02_0639 -
           10047105-10047204,10047315-10047495,10049375-10049464,
           10050718-10050796,10050887-10051024,10051897-10051977,
           10052079-10052264,10052366-10052458,10052537-10052603,
           10052709-10052798,10052909-10053441
          Length = 545

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 385 HLVAATEVVESVAGQLFRRQKRNGPL 308
           HLV ATE  + V G+ ++  +++ PL
Sbjct: 392 HLVEATEAAKPVLGKYYKEPEKSAPL 417


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,572,505
Number of Sequences: 37544
Number of extensions: 262656
Number of successful extensions: 597
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)