Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021896
         (510 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)                   68   4e-12
SB_39662| Best HMM Match : BIR (HMM E-Value=1.2e-19)                   57   1e-08
SB_28819| Best HMM Match : BIR (HMM E-Value=2.6e-32)                   56   2e-08
SB_11949| Best HMM Match : F5_F8_type_C (HMM E-Value=3.2e-11)          28   3.9  
SB_29093| Best HMM Match : HNOBA (HMM E-Value=0)                       27   9.0  

>SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)
          Length = 514

 Score = 68.1 bits (159), Expect = 4e-12
 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +2

Query: 269 DMRREEERLKTFDQWPVTF-LTPEQLARNGFYYLGRGDEVCCAFCKVEIMRWVEGDDPAA 445
           D++ E  RL TF  WP +  + P +L+  GFYYLG  D V C  C V +  W   D P  
Sbjct: 127 DLQSEHHRLTTFVDWPESSPVRPWELSSAGFYYLGDQDSVKCYKCGVALRNWEPDDLPWV 186

Query: 446 DHRRWAPQCPFV 481
           +H +W+P CP V
Sbjct: 187 EHEKWSPHCPLV 198


>SB_39662| Best HMM Match : BIR (HMM E-Value=1.2e-19)
          Length = 314

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
 Frame = +2

Query: 260 DMPDMRREEERLKTFDQWPVTFLTPE-QLARNGFYYLGRGDEVCCAFCKVEIMRWVEGDD 436
           D  D+     R++TF+ WP T      +LAR GF + GR D V C  CK  + +W   D 
Sbjct: 128 DPNDLNLVGARVRTFNFWPATSSANVFELARAGFVFTGRDDVVECFKCKGTLKQWKVDDR 187

Query: 437 PAADHRRWAPQCPFV 481
           P   HR + P CP +
Sbjct: 188 PIESHREFYPDCPLL 202


>SB_28819| Best HMM Match : BIR (HMM E-Value=2.6e-32)
          Length = 141

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
 Frame = +2

Query: 269 DMRREEERLKTFDQWPVTFL----TPEQLARNGFYYLGRGDE---VCCAFCKVEIMRWVE 427
           +M  E++RL+TF  WP   +    T E++A  GFY+    D+     C  C  E+  W  
Sbjct: 9   EMNMEKKRLETFKDWPFNHMDCKCTAEKMAAAGFYHCETDDDPDVARCFVCFKELDGWEP 68

Query: 428 GDDPAADHRRWAPQCPFVRKQMYAN 502
            DDP  +H++ +P+C FV+    +N
Sbjct: 69  EDDPWQEHKKHSPKCEFVKLNKSSN 93


>SB_11949| Best HMM Match : F5_F8_type_C (HMM E-Value=3.2e-11)
          Length = 378

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 403 LTESTAHLVAATEVVESVAGQLFRRQKRNGPLIKCFQ 293
           L+  T H V + +V  S  G+ ++  K NG +++CFQ
Sbjct: 294 LSLQTQHWVTSFKVSFSQLGRAYQWYKVNGSIMRCFQ 330


>SB_29093| Best HMM Match : HNOBA (HMM E-Value=0)
          Length = 694

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 350 CGPIVPASKT*RATDQMFSDVPLHDACR 267
           C P V    + R     FSD+P+HDA R
Sbjct: 531 CSPRVKNMDSLREKGLYFSDIPVHDATR 558


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,509,777
Number of Sequences: 59808
Number of extensions: 293536
Number of successful extensions: 534
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)