Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021895
(579 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2; Endopterygot... 190 2e-47
UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96; Eukaryo... 164 1e-39
UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70; Eukaryo... 156 3e-37
UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;... 134 1e-30
UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5; E... 117 2e-25
UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1; ... 116 4e-25
UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL... 116 5e-25
UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium c... 113 2e-24
UniRef50_A7R5H8 Cluster: Chromosome undetermined scaffold_974, w... 111 9e-24
UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2; Ol... 110 3e-23
UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2; Scleroti... 103 2e-21
UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1, pu... 103 3e-21
UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lambli... 103 4e-21
UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1; Encephal... 96 5e-19
UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3; Trich... 96 6e-19
UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1; L... 91 2e-17
UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n... 91 2e-17
UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1, pu... 89 9e-17
UniRef50_Q4U6T4 Cluster: SL3; n=1; Brugia malayi|Rep: SL3 - Brug... 88 1e-16
UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal ... 87 2e-16
UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia b... 87 2e-16
UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2; Cryptomo... 83 6e-15
UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9; Euryarc... 81 1e-14
UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2; Euryarc... 77 4e-13
UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13; Euryar... 75 1e-12
UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4; Thermop... 75 2e-12
UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9; Archaea... 73 5e-12
UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular org... 71 3e-11
UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3; Archaea... 69 8e-11
UniRef50_Q3LWC7 Cluster: Ribosomal protein L4A; n=1; Bigelowiell... 64 3e-09
UniRef50_P60847 Cluster: 50S ribosomal protein L4P; n=1; Nanoarc... 64 3e-09
UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal ... 61 2e-08
UniRef50_Q9YFM1 Cluster: 50S ribosomal protein L4P; n=8; Archaea... 57 3e-07
UniRef50_P12735 Cluster: 50S ribosomal protein L4P; n=1; Haloarc... 48 2e-04
UniRef50_A0RVX5 Cluster: Ribosomal protein L4; n=2; Thermoprotei... 43 0.006
UniRef50_Q4FXU7 Cluster: Putative uncharacterized protein; n=2; ... 42 0.014
UniRef50_Q5NB71 Cluster: Putative uncharacterized protein P0431F... 36 0.91
UniRef50_A1FG00 Cluster: Putative uncharacterized protein; n=1; ... 33 3.7
UniRef50_UPI0000F2E6E2 Cluster: PREDICTED: hypothetical protein;... 33 6.4
UniRef50_Q6LFN6 Cluster: Putative uncharacterized protein; n=1; ... 32 8.5
>UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2;
Endopterygota|Rep: Ribosomal protein 23 - Lonomia
obliqua (Moth)
Length = 274
Score = 190 bits (464), Expect = 2e-47
Identities = 88/112 (78%), Positives = 100/112 (89%)
Frame = +3
Query: 243 SRQSQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD 422
S + QEINKTKQAVIFLRR+KAWSD+LKVYKSQRLRAGKGKMRNRRR+ RKGPLII+NKD
Sbjct: 20 SDKIQEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRLHRKGPLIIYNKD 79
Query: 423 QGLTRAFRNIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRLDPLFGS 578
QGLTR+FRNIPGV+++NVNKL GGH+GRF+IWTQSAF RLD +FGS
Sbjct: 80 QGLTRSFRNIPGVDMVNVNKLNLLHLAPGGHVGRFMIWTQSAFERLDAIFGS 131
>UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96;
Eukaryota|Rep: 60S ribosomal protein L4 - Drosophila
melanogaster (Fruit fly)
Length = 401
Score = 164 bits (399), Expect = 1e-39
Identities = 73/112 (65%), Positives = 94/112 (83%)
Frame = +3
Query: 243 SRQSQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD 422
S + Q++ KTKQAVIFLRRLK W+DI KVYKSQR RAG+G MR+RRRI R+GPL++++KD
Sbjct: 158 SDEVQKVQKTKQAVIFLRRLKIWADIQKVYKSQRFRAGRGTMRDRRRIARRGPLVVYDKD 217
Query: 423 QGLTRAFRNIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRLDPLFGS 578
+GL +AFRNIPG+E +NV+KL + GGH+GRFVIWT+SAF RL+ LFG+
Sbjct: 218 EGLRKAFRNIPGIETINVDKLNLLKLAPGGHVGRFVIWTESAFARLNDLFGT 269
Score = 105 bits (253), Expect = 6e-22
Identities = 47/87 (54%), Positives = 58/87 (66%)
Frame = +1
Query: 1 ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXX 180
ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK +RRWH
Sbjct: 77 ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVSAIAASGV 136
Query: 181 XXXXQARGHIIEKIPELPMVVADKVKR 261
Q++GH+I+ + E P+VV+D+V++
Sbjct: 137 PALVQSKGHVIDGVSEFPLVVSDEVQK 163
>UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70;
Eukaryota|Rep: 60S ribosomal protein L4 - Homo sapiens
(Human)
Length = 427
Score = 156 bits (379), Expect = 3e-37
Identities = 69/104 (66%), Positives = 88/104 (84%)
Frame = +3
Query: 267 KTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFR 446
KTK+AV+ L++LKAW+DI KVY SQR+RAGKGKMRNRRRIQR+GP II+N+D G+ +AFR
Sbjct: 163 KTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFR 222
Query: 447 NIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRLDPLFGS 578
NIPG+ LLNV+KL + GGH+GRF IWT+SAF +LD L+G+
Sbjct: 223 NIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGT 266
Score = 112 bits (270), Expect = 5e-24
Identities = 51/86 (59%), Positives = 57/86 (66%)
Frame = +1
Query: 1 ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXX 180
ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 74 ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASAL 133
Query: 181 XXXXQARGHIIEKIPELPMVVADKVK 258
++GH IE++PELP+VV DKV+
Sbjct: 134 PALVMSKGHRIEEVPELPLVVEDKVE 159
>UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;
Ostreococcus tauri|Rep: Ribosomal protein
RPL1/RPL2/RL4L4 - Ostreococcus tauri
Length = 404
Score = 134 bits (324), Expect = 1e-30
Identities = 60/109 (55%), Positives = 86/109 (78%)
Frame = +3
Query: 252 SQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGL 431
+ I KT +AV L++L A++DI KV S+ +R+GKGKMRNRR +QR+GPL+++++D G+
Sbjct: 161 ASSIKKTAKAVELLKQLGAYADIEKVKASRNVRSGKGKMRNRRYVQRRGPLVVYSEDNGV 220
Query: 432 TRAFRNIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRLDPLFGS 578
TRAFRNIPGVEL +V++L GGH+GRF+IWT+SAF +LD +FG+
Sbjct: 221 TRAFRNIPGVELCSVDRLGLLTLAPGGHVGRFIIWTKSAFEKLDSIFGT 269
Score = 35.5 bits (78), Expect = 0.91
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Frame = +1
Query: 103 WRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPMVV---ADKVKRSTRP 273
WRRWH ARGH +E +PE+P+VV A +K++ +
Sbjct: 111 WRRWHRRVNIKEKRYAVCSAIAASAVPSLLLARGHRVEGVPEVPLVVDDSASSIKKTAKA 170
Query: 274 NRLSSS*GA 300
L GA
Sbjct: 171 VELLKQLGA 179
>UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L4 - Entamoeba histolytica HM-1:IMSS
Length = 431
Score = 117 bits (282), Expect = 2e-25
Identities = 55/113 (48%), Positives = 78/113 (69%), Gaps = 1/113 (0%)
Frame = +3
Query: 243 SRQSQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIF-NK 419
S+ I KTKQAV L+++ A+SD+LKV S+ +RAG+GKMR R+ +RKGPL+++ N
Sbjct: 156 SKSISVIKKTKQAVYLLKKINAYSDVLKVIASKTVRAGQGKMRGRKIKERKGPLVVYGND 215
Query: 420 DQGLTRAFRNIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRLDPLFGS 578
D +AFRNIPGV+ V L G H+GRF+IWT+SAF +L+ +FG+
Sbjct: 216 DLQAVKAFRNIPGVDTCRVENLSVLNLAPGCHIGRFIIWTESAFKKLNTIFGT 268
Score = 70.9 bits (166), Expect = 2e-11
Identities = 34/84 (40%), Positives = 44/84 (52%)
Frame = +1
Query: 1 ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXX 180
ARIPR+ G G+ R+GQGAFGNM R G MF+P K +R+W
Sbjct: 74 ARIPRISGSGSGRNGQGAFGNMTRKGHMFSPLKNFRKWQRKTPKQMRRFAVASCIAASAV 133
Query: 181 XXXXQARGHIIEKIPELPMVVADK 252
ARGH I +P++P+VV K
Sbjct: 134 PALVSARGHHIAGVPQIPLVVNSK 157
>UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 349
Score = 116 bits (279), Expect = 4e-25
Identities = 56/109 (51%), Positives = 74/109 (67%), Gaps = 3/109 (2%)
Frame = +3
Query: 261 INKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG---L 431
I KT AV L+ + A +D K S++LRAGKGK+R RR QR+GPL+I+N D+ L
Sbjct: 140 IRKTSAAVALLKAVGAGADCEKAKNSRKLRAGKGKLRGRRHKQRRGPLVIYNPDEDGKEL 199
Query: 432 TRAFRNIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRLDPLFGS 578
+AFRNIPGVE +V + + GGHLGRF++WT SAFG LD ++GS
Sbjct: 200 VKAFRNIPGVETSSVYSMNLLQLAPGGHLGRFIVWTSSAFGALDTIYGS 248
Score = 94.7 bits (225), Expect = 1e-18
Identities = 41/82 (50%), Positives = 49/82 (59%)
Frame = +1
Query: 1 ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXX 180
ARIPRV GGGTHR+GQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 50 ARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWHQKINLNQKRFATASALAASGS 109
Query: 181 XXXXQARGHIIEKIPELPMVVA 246
ARGH + +PE+P+V++
Sbjct: 110 PALLMARGHNVSTVPEVPLVIS 131
>UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL4 -
Streblomastix strix
Length = 492
Score = 116 bits (278), Expect = 5e-25
Identities = 53/108 (49%), Positives = 76/108 (70%)
Frame = +3
Query: 255 QEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLT 434
++I KTK+AV L LKA D+ +S+R+R G GK RNRR QR+G LI+ ++++GL
Sbjct: 159 EQIKKTKEAVKVLAALKASDDVKHSAESKRIRVGSGKARNRRYTQRRGVLIVHDQNEGLA 218
Query: 435 RAFRNIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRLDPLFGS 578
AFRNI GV++ NV +L + GGHLGRF+IWT+ A+ +LD L+G+
Sbjct: 219 NAFRNISGVDISNVXRLNIRDLAPGGHLGRFIIWTEGAYKKLDKLYGT 266
Score = 83.0 bits (196), Expect = 5e-15
Identities = 37/87 (42%), Positives = 48/87 (55%)
Frame = +1
Query: 1 ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXX 180
AR+PR+ G GT R+GQ AF N RGG M++P K WRRWH
Sbjct: 74 ARVPRISGSGTSRNGQAAFANSARGGHMYSPLKVWRRWHRMVNVTQRRFAMCSAIAASSN 133
Query: 181 XXXXQARGHIIEKIPELPMVVADKVKR 261
ARGH I+ +PELP+VV+D V++
Sbjct: 134 PSLVLARGHKIDNVPELPLVVSDDVEQ 160
>UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium
caudatum|Rep: Ribosomal protein L4 - Paramecium caudatum
Length = 252
Score = 113 bits (273), Expect = 2e-24
Identities = 54/109 (49%), Positives = 75/109 (68%), Gaps = 1/109 (0%)
Frame = +3
Query: 255 QEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLII-FNKDQGL 431
+ KTK A+ FL+R A+ D+ KV ++ +RAG K R ++ RKGPL++ FN++ L
Sbjct: 6 ESYEKTKDALNFLKRFGAFEDVQKVVSTKTIRAGVSKSRGKKYRVRKGPLVVYFNENAKL 65
Query: 432 TRAFRNIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRLDPLFGS 578
+AFRN+PGVE++NV +L + GG LGRFVIWTQSAF LD LFG+
Sbjct: 66 LKAFRNVPGVEVVNVTRLNLLQLAPGGQLGRFVIWTQSAFANLDKLFGT 114
>UniRef50_A7R5H8 Cluster: Chromosome undetermined scaffold_974,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_974, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 386
Score = 111 bits (268), Expect = 9e-24
Identities = 53/110 (48%), Positives = 74/110 (67%), Gaps = 1/110 (0%)
Frame = +3
Query: 252 SQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG- 428
++ + KT A+ L++ A+ D K S + GKGKMRNRR I RKGPLI++ +
Sbjct: 21 AESVEKTSAAIDILKQFDAYLDTEKAKDSHAIHPGKGKMRNRRYISRKGPLIVYGMEGAK 80
Query: 429 LTRAFRNIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRLDPLFGS 578
L +AFRNIPGVE+ NV++L + GGHLGRFVIWT+S+F +LD ++ S
Sbjct: 81 LVKAFRNIPGVEVANVDRLNLLKLAPGGHLGRFVIWTKSSFEKLDSIYRS 130
Score = 32.7 bits (71), Expect = 6.4
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 196 ARGHIIEKIPELPMVVADKVK 258
ARGH IE +PELP+V+ D +
Sbjct: 2 ARGHRIESVPELPLVIGDSAE 22
>UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2;
Oligohymenophorea|Rep: Ribosomal protein L4, putative -
Paramecium tetraurelia
Length = 406
Score = 110 bits (264), Expect = 3e-23
Identities = 53/109 (48%), Positives = 74/109 (67%), Gaps = 1/109 (0%)
Frame = +3
Query: 255 QEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLII-FNKDQGL 431
+ KT A+ FL+R A+ D+ KV ++ +RAG K R ++ RKGPL++ FN++ L
Sbjct: 160 ESYEKTTDALNFLKRFGAFEDVQKVVSTKVVRAGISKQRGKKYRVRKGPLVVYFNENAKL 219
Query: 432 TRAFRNIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRLDPLFGS 578
+AFRN+PGVE++NV +L + GG LGRFVIWTQSAF LD LFG+
Sbjct: 220 LKAFRNVPGVEVVNVTRLNLLQLAPGGQLGRFVIWTQSAFAHLDKLFGT 268
Score = 89.4 bits (212), Expect = 5e-17
Identities = 41/86 (47%), Positives = 48/86 (55%)
Frame = +1
Query: 1 ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXX 180
ARIPRV G GTHRSGQ AFGN CR GRM P K WRRWH
Sbjct: 75 ARIPRVSGSGTHRSGQAAFGNQCRKGRMSLPIKVWRRWHRRVNIKQKRHAAATAVAATGI 134
Query: 181 XXXXQARGHIIEKIPELPMVVADKVK 258
ARGH I ++P++P+VV DK++
Sbjct: 135 VPLVLARGHRISQVPQIPLVVEDKIE 160
>UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2;
Sclerotiniaceae|Rep: 60S ribosomal protein L4 -
Sclerotinia sclerotiorum 1980
Length = 373
Score = 103 bits (248), Expect = 2e-21
Identities = 51/113 (45%), Positives = 74/113 (65%), Gaps = 3/113 (2%)
Frame = +3
Query: 249 QSQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFN---K 419
+ +I +T A L+ + A D+ KV S++LRAGKGK+R RR QR+GPL++++
Sbjct: 159 EGAKIARTAAAAGLLKTVGALKDVEKVKDSRKLRAGKGKLRGRRHRQRRGPLVVYDGATD 218
Query: 420 DQGLTRAFRNIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRLDPLFGS 578
+ L RAFRN+PGVE +V L + GGHLGRF+IW+ SAF LD ++G+
Sbjct: 219 GKELVRAFRNLPGVETCDVYSLNLLQLAPGGHLGRFIIWSSSAFKALDNIYGT 271
Score = 93.5 bits (222), Expect = 3e-18
Identities = 44/99 (44%), Positives = 56/99 (56%)
Frame = +1
Query: 1 ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXX 180
ARIPRV GGGTHR+GQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 73 ARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWHQKINLGQKRFATVSALAASGV 132
Query: 181 XXXXQARGHIIEKIPELPMVVADKVKRSTRPNRLSSS*G 297
ARGH I ++ E+P+V+ +V + R +++ G
Sbjct: 133 PALLFARGHQISEVAEVPLVINSEVFEGAKIARTAAAAG 171
>UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L4/L1, putative - Plasmodium chabaudi
Length = 411
Score = 103 bits (247), Expect = 3e-21
Identities = 50/111 (45%), Positives = 71/111 (63%)
Frame = +3
Query: 243 SRQSQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD 422
S + + KTK A+ FL L ++ ++ KS +LRA GKMRNR+ GPLII++ D
Sbjct: 155 SNDIESMQKTKDALKFLISLGLRDEVNRLIKSXKLRARXGKMRNRKYKISNGPLIIYSXD 214
Query: 423 QGLTRAFRNIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRLDPLFG 575
G+ +AFRNIPGV+L NV KL + GG +GR IW++ AF +LD ++G
Sbjct: 215 SGIKKAFRNIPGVDLCNVTKLNLLKLAPGGSIGRLCIWSEDAFKKLDVIYG 265
Score = 85.0 bits (201), Expect = 1e-15
Identities = 40/86 (46%), Positives = 48/86 (55%)
Frame = +1
Query: 1 ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXX 180
ARIPRV GGGTHR+GQ AFGNMCRGG MF PTK WRRW
Sbjct: 74 ARIPRVPGGGTHRAGQAAFGNMCRGGGMFNPTKIWRRWGRKINLKEKRYAVCSSIAASGI 133
Query: 181 XXXXQARGHIIEKIPELPMVVADKVK 258
ARGH I + E+P+V ++ ++
Sbjct: 134 TSLVLARGHRISNLKEVPLVASNDIE 159
>UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_79_45017_44067 - Giardia lamblia
ATCC 50803
Length = 316
Score = 103 bits (246), Expect = 4e-21
Identities = 45/109 (41%), Positives = 72/109 (66%)
Frame = +3
Query: 252 SQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGL 431
+ + KTK A+ ++ + D+ + S+ +RAG+GKMRNRR I RKGPL+I+N + +
Sbjct: 146 TDNVTKTKDALAIIKAVGVLRDVERCKDSRHIRAGRGKMRNRRYITRKGPLVIYNTED-V 204
Query: 432 TRAFRNIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRLDPLFGS 578
R FRN+PGV+L +V+ ++ E G H GR ++WT+SAF LD ++ +
Sbjct: 205 ARGFRNLPGVDLCHVSSIRLLELAPGSHPGRLILWTKSAFASLDDVYAA 253
Score = 44.0 bits (99), Expect = 0.003
Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Frame = +1
Query: 1 ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXX 180
AR+PR GG GA+ N RGG M PT RRW
Sbjct: 70 ARLPRKHGG------IGAYANFARGGHMAHPTTVIRRWCRKVNLNQRRYAVASALAASAN 123
Query: 181 XXXXQARGHIIEKIPELPMVV-ADKVKRS 264
+ARGH I +P +P+VV D V ++
Sbjct: 124 AALVEARGHRIADVPSIPLVVDTDNVTKT 152
>UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L4 -
Encephalitozoon cuniculi
Length = 335
Score = 96.3 bits (229), Expect = 5e-19
Identities = 49/103 (47%), Positives = 66/103 (64%)
Frame = +3
Query: 267 KTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFR 446
KTK AV LR L ++ +V KS+ +R GKGKMRNRR QRKG LI+ + + FR
Sbjct: 160 KTKDAVEILRNLNMTEELKRVEKSRGVRCGKGKMRNRRYTQRKGILIVHGESSEML-GFR 218
Query: 447 NIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRLDPLFG 575
NI GV+ ++++ L E GG GR +IWT+SAF +LD +FG
Sbjct: 219 NIRGVDQMSIDSLDLLELAPGGVAGRLIIWTESAFEKLDKIFG 261
Score = 76.6 bits (180), Expect = 4e-13
Identities = 36/90 (40%), Positives = 48/90 (53%)
Frame = +1
Query: 1 ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXX 180
AR+PRV+GGGT R+GQGAF N CR GRM PTK RRW
Sbjct: 71 ARVPRVKGGGTRRAGQGAFANFCRKGRMAHPTKTHRRWARKVVENTKKIAEAMAVAASAQ 130
Query: 181 XXXXQARGHIIEKIPELPMVVADKVKRSTR 270
+ARGH I + LP++V+D + ++ +
Sbjct: 131 ASLVEARGHRISDVKMLPIIVSDDIAKARK 160
>UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3;
Trichomonas vaginalis G3|Rep: Ribosomal protein,
putative - Trichomonas vaginalis G3
Length = 370
Score = 95.9 bits (228), Expect = 6e-19
Identities = 43/108 (39%), Positives = 67/108 (62%)
Frame = +3
Query: 255 QEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLT 434
QEI +T+ AV L+++ + D+ +V R+ KGK R +KGPL+I+N+D+G+
Sbjct: 156 QEIKRTRDAVELLKKVGVYGDVQRVLDGSVHRSSKGKFRRAAYKTKKGPLVIYNEDKGIV 215
Query: 435 RAFRNIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRLDPLFGS 578
+AFRNIPGVE ++V L + +GR +WT+SAF LD ++ S
Sbjct: 216 KAFRNIPGVETISVKALALAKLAPAAQVGRLTVWTESAFKALDGIYES 263
Score = 69.3 bits (162), Expect = 6e-11
Identities = 33/90 (36%), Positives = 45/90 (50%)
Frame = +1
Query: 1 ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXX 180
A +PRV G G++R+GQGA+ N CRGG F P RRW
Sbjct: 71 ACVPRVNGSGSNRNGQGAYANFCRGGHRFNPPTLLRRWFRPVPSRQRKFAIASAIAATAV 130
Query: 181 XXXXQARGHIIEKIPELPMVVADKVKRSTR 270
QARGH++ ++ E+P+VV D V+ R
Sbjct: 131 VPLVQARGHVLGEVKEVPIVVVDAVQEIKR 160
>UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1;
Leishmania major strain Friedlin|Rep: Ribosomal protein
L1a, putative - Leishmania major strain Friedlin
Length = 432
Score = 91.1 bits (216), Expect = 2e-17
Identities = 42/86 (48%), Positives = 50/86 (58%)
Frame = +1
Query: 1 ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXX 180
ARIPR+ GGGT SG GAFGNMCRGGRMFAPTK +RRWH
Sbjct: 73 ARIPRISGGGTSTSGAGAFGNMCRGGRMFAPTKIFRRWHRKINLHQKRFAVVSALAASSV 132
Query: 181 XXXXQARGHIIEKIPELPMVVADKVK 258
+RGH I +PE+P+VV D ++
Sbjct: 133 PSLVMSRGHQIGNVPEVPLVVEDSIQ 158
Score = 79.8 bits (188), Expect = 4e-14
Identities = 39/86 (45%), Positives = 58/86 (67%)
Frame = +3
Query: 255 QEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLT 434
Q KTK+A+ FL+ + A D+ +V S+ +RAG+GKMRNRR + R+GP+++ ++G T
Sbjct: 158 QGYEKTKEAMAFLKAIAAIDDVNRVNDSREIRAGRGKMRNRRYVARRGPMLVMPNNKG-T 216
Query: 435 RAFRNIPGVELLNVNKLKPPEAGSGG 512
RAFRNI G++L NV+ L GG
Sbjct: 217 RAFRNIFGLDLANVSALTLLHLAPGG 242
>UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n=4;
Cryptosporidium|Rep: 60S ribosomal protein-like,
putative - Cryptosporidium parvum Iowa II
Length = 394
Score = 90.6 bits (215), Expect = 2e-17
Identities = 47/114 (41%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
Frame = +3
Query: 243 SRQSQEINKTKQAVIFLRRL-KAWSDILK-VYKSQRLRAGKGKMRNRRRIQRKGPLIIFN 416
S + Q INKT AV F + K + +K + S +R GKGKMRNRRR+ GPL+++
Sbjct: 156 SNEIQNINKTSTAVEFFKNFGKGLEEEMKRIESSIAIRCGKGKMRNRRRVCAVGPLVVYA 215
Query: 417 KDQGLTRAFRNIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRLDPLFGS 578
+D G+ +A RNI GV+ +V +L GG GR I+T+ A RL ++GS
Sbjct: 216 EDNGIVKAMRNIKGVDTCSVERLNLLRLAPGGTFGRLTIFTKGAIKRLQEIYGS 269
Score = 85.4 bits (202), Expect = 9e-16
Identities = 39/86 (45%), Positives = 50/86 (58%)
Frame = +1
Query: 1 ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXX 180
ARIPRV GT RSGQGAFGNMCRGG MF+P K +RR+H
Sbjct: 75 ARIPRVSASGTSRSGQGAFGNMCRGGHMFSPNKTYRRFHRKINTTEKRHAVAAAIAATGC 134
Query: 181 XXXXQARGHIIEKIPELPMVVADKVK 258
ARGH I +PELP+V++++++
Sbjct: 135 PSLVMARGHRINNVPELPLVISNEIQ 160
>UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=2; Theileria|Rep: 60S ribosomal subunit
protein L4/L1, putative - Theileria annulata
Length = 426
Score = 88.6 bits (210), Expect = 9e-17
Identities = 38/90 (42%), Positives = 50/90 (55%)
Frame = +1
Query: 1 ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXX 180
+R PRV+GGGTHRSGQ A+ N CR G MFAPT+ WR WH
Sbjct: 73 SRTPRVKGGGTHRSGQAAYANFCRAGGMFAPTRTWRHWHRKINLKEKRLALAVSVAATAS 132
Query: 181 XXXXQARGHIIEKIPELPMVVADKVKRSTR 270
+RGH +E +PELP+V+ D ++ T+
Sbjct: 133 VPLVMSRGHRVESVPELPLVLDDTMETLTK 162
Score = 52.4 bits (120), Expect = 7e-06
Identities = 36/105 (34%), Positives = 58/105 (55%), Gaps = 2/105 (1%)
Frame = +3
Query: 255 QEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD--QG 428
+ + KT+ AV L + ++ +V ++R + KGK R GPL++ +G
Sbjct: 158 ETLTKTRDAVELLNSMGLADELKRVSVTKRTKR-KGKKRP------VGPLVVMRSTAVEG 210
Query: 429 LTRAFRNIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRLD 563
RAFRNIPGV++++V + + G LGR VI+++SAF LD
Sbjct: 211 -KRAFRNIPGVDVMSVEHMNLLKLAPAGTLGRLVIFSKSAFELLD 254
>UniRef50_Q4U6T4 Cluster: SL3; n=1; Brugia malayi|Rep: SL3 - Brugia
malayi (Filarial nematode worm)
Length = 306
Score = 88.2 bits (209), Expect = 1e-16
Identities = 37/39 (94%), Positives = 38/39 (97%)
Frame = +1
Query: 1 ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 117
ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK +RRWH
Sbjct: 191 ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKVFRRWH 229
>UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 248
Score = 87.4 bits (207), Expect = 2e-16
Identities = 39/69 (56%), Positives = 52/69 (75%)
Frame = +3
Query: 234 HGCSRQSQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIF 413
H + + KTK+ V+ L++LKAW+DI KVY SQR+RAGKGKMRNRR IQR+G II+
Sbjct: 93 HQPGHKVEGYKKTKEEVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRPIQRRGSCIIY 152
Query: 414 NKDQGLTRA 440
N+D G+ +A
Sbjct: 153 NEDNGIIKA 161
>UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia
bovis|Rep: Ribosomal protein RPL4A - Babesia bovis
Length = 360
Score = 87.4 bits (207), Expect = 2e-16
Identities = 38/87 (43%), Positives = 50/87 (57%)
Frame = +1
Query: 1 ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXX 180
AR+PRV+GGGTHR+GQ A+ N CR G M+APT+ WRRWH
Sbjct: 73 ARVPRVKGGGTHRAGQAAYANFCRAGGMYAPTRVWRRWHRKVNLKEKRQALASALAATAV 132
Query: 181 XXXXQARGHIIEKIPELPMVVADKVKR 261
+RGH IE + E+PMVV D +++
Sbjct: 133 VPVVMSRGHRIEALREVPMVVDDAIEQ 159
Score = 62.5 bits (145), Expect = 7e-09
Identities = 40/105 (38%), Positives = 59/105 (56%), Gaps = 2/105 (1%)
Frame = +3
Query: 255 QEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD--QG 428
++INKTK AV L + +++ ++ K G+ R+ R+ + GPLII +G
Sbjct: 158 EQINKTKDAVKLLETIGLGAELKRIDKVT------GRARDGRKKRPVGPLIILRATAVEG 211
Query: 429 LTRAFRNIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRLD 563
RAFRNIPGVE+ V +L + G LGR +W++SAF LD
Sbjct: 212 -KRAFRNIPGVEVACVERLNLLKLAPAGALGRLCVWSKSAFEALD 255
>UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2;
Cryptomonadaceae|Rep: 60s ribosomal protein L1 -
Guillardia theta (Cryptomonas phi)
Length = 255
Score = 82.6 bits (195), Expect = 6e-15
Identities = 35/87 (40%), Positives = 48/87 (55%)
Frame = +1
Query: 1 ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXX 180
+R+PRV G GTHRSGQGA N CRGGR+F PT WR+WH
Sbjct: 69 SRVPRVPGSGTHRSGQGAIANFCRGGRIFNPTTIWRKWHHKINKNQRKSAIFSAIASSSI 128
Query: 181 XXXXQARGHIIEKIPELPMVVADKVKR 261
+RG+ ++ IPE+P V+ D +++
Sbjct: 129 VSIIVSRGYRVKTIPEIPFVIEDSIEK 155
Score = 68.5 bits (160), Expect = 1e-10
Identities = 35/105 (33%), Positives = 61/105 (58%)
Frame = +3
Query: 255 QEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLT 434
++I KT+ + L L + I++ ++L++GKGKMRNRR + GPL++F +
Sbjct: 154 EKIPKTRDLIKILTTLGI-NSIVRNKLKRKLKSGKGKMRNRRFKKPTGPLLVFKNN---L 209
Query: 435 RAFRNIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRLDPL 569
++ RNI ++ + ++ L + GGHLGR IW+ AF L+ +
Sbjct: 210 KSLRNIANIDCMKISALNLTKLAPGGHLGRLCIWSSKAFQMLNTI 254
>UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Archaeoglobus fulgidus
Length = 252
Score = 81.4 bits (192), Expect = 1e-14
Identities = 35/102 (34%), Positives = 60/102 (58%)
Frame = +3
Query: 243 SRQSQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD 422
S + + + +TK R + ++D+ + + +R RAG+GKMR RR +++K L++ KD
Sbjct: 142 SNELESVKRTKDVAEVFRAIGVYADVERAKERKRYRAGRGKMRGRRYVKKKSVLLVVGKD 201
Query: 423 QGLTRAFRNIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSA 548
G+ +A +N+PGV+ + V L G H GR +WT+SA
Sbjct: 202 DGVVKAAKNLPGVDAVVVKDLNVELLAPGCHPGRLTVWTKSA 243
>UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 259
Score = 76.6 bits (180), Expect = 4e-13
Identities = 35/106 (33%), Positives = 60/106 (56%)
Frame = +3
Query: 255 QEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLT 434
+ + TK+ + L DI++ K +++++GKGK+R R+ KGPL++ D+G++
Sbjct: 149 ETVKTTKETREIFKDLGIMDDIVRAKKGRKIKSGKGKLRGRKYRTPKGPLVVVGNDRGIS 208
Query: 435 RAFRNIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRLDPLF 572
RN GV+++ VN + G H GR I+T+SA +L LF
Sbjct: 209 LGARNHAGVDVVEVNNINAELLAPGTHAGRLTIYTKSAIEKLGDLF 254
>UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanopyrus kandleri
Length = 260
Score = 74.9 bits (176), Expect = 1e-12
Identities = 34/107 (31%), Positives = 59/107 (55%)
Frame = +3
Query: 255 QEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLT 434
+ +NK ++ F + + W+D+ + ++R+RAGKGK R RR ++ K LI+ ++D+G+
Sbjct: 153 KSLNKAREVREFFKSVGLWADVERAKSNRRIRAGKGKRRGRRYVKPKSVLIVVDEDEGIK 212
Query: 435 RAFRNIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRLDPLFG 575
RN PGV+++ L G H GR ++T A L+ G
Sbjct: 213 LGARNHPGVDVVEAMHLGVEHLAPGAHPGRLTVFTPGALEVLEERLG 259
Score = 38.7 bits (86), Expect = 0.098
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = +1
Query: 1 ARIPRVRGGGTHRSGQGAFGNMCRGG-RMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXX 177
A +PRV+G +G+ A GG + APT P + W
Sbjct: 68 AMVPRVKGRRHPAAGRAARVAQAVGGQKAHAPT-PEKDWTQRVNRKERRAALRSALAATA 126
Query: 178 XXXXXQARGHIIEKIPELPMVVADKVK 258
+ RGH+I+ +P LP+VV D++K
Sbjct: 127 KPEFVKERGHVIDDVPHLPVVVVDELK 153
>UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L4P -
Thermoplasma acidophilum
Length = 255
Score = 74.5 bits (175), Expect = 2e-12
Identities = 39/100 (39%), Positives = 58/100 (58%)
Frame = +3
Query: 261 INKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRA 440
INKTK A+ L+ L + DI + + + +RAG+GKMR RR Q K LI+ + +A
Sbjct: 152 INKTKDAIALLKNLGVYEDIERSREGKHIRAGRGKMRGRRYKQPKSVLIVARNSSAM-KA 210
Query: 441 FRNIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRL 560
FR++PGV++ + N L + GG GR I+T+ A L
Sbjct: 211 FRSLPGVDIASPNSLSIRKLAPGGVGGRLTIFTEGAIESL 250
>UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9;
Archaea|Rep: 50S ribosomal protein L4P - Pyrobaculum
aerophilum
Length = 283
Score = 72.9 bits (171), Expect = 5e-12
Identities = 39/108 (36%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Frame = +3
Query: 252 SQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNK-DQG 428
+++IN+ K+A L W D+ + + ++RAGKGKMR RR + K L++ + +
Sbjct: 175 AEKINRAKEAKKLFEALGLWPDVERAAEGVKIRAGKGKMRGRRYKEPKSVLVVVSDLNAP 234
Query: 429 LTRAFRNIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRLDPLF 572
L A RN PGV+++ VN L GG GR +WT A +L LF
Sbjct: 235 LIAAVRNFPGVDVVAVNNLNILVLAPGGVPGRLTLWTAPAVEKLRGLF 282
Score = 47.2 bits (107), Expect = 3e-04
Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Frame = +1
Query: 1 ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXX 180
ARIPR +G R G F RGGR P K ++ H
Sbjct: 94 ARIPRYKGSLWPR---GCFAPNTRGGRRAHPPKVEKKLHEEINKKEKKLAIRSAIAATAY 150
Query: 181 XXXXQARGHIIEKIPELPMVV---ADKVKRSTRPNRLSSS*G 297
ARGH++EK+P LP+VV A+K+ R+ +L + G
Sbjct: 151 RSWVAARGHVVEKVPSLPVVVVGDAEKINRAKEAKKLFEALG 192
>UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular
organisms|Rep: Ribosomal protein L4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 304
Score = 70.5 bits (165), Expect = 3e-11
Identities = 33/98 (33%), Positives = 55/98 (56%)
Frame = +3
Query: 270 TKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRN 449
T++ V + L +D+ + + +RAGKG MR R+ K L++ ++ GL +A RN
Sbjct: 207 TRKFVAMMEGLGLGADLDRARTGRTIRAGKGTMRGRKYRTPKSILLVVSQTNGLAKAARN 266
Query: 450 IPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRLD 563
IPGV+++ L + GG GR +WT++A G L+
Sbjct: 267 IPGVDIVVAKDLSAEDLAPGGDAGRLTVWTKAAIGALE 304
>UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3;
Archaea|Rep: 50S ribosomal protein L4P - Sulfolobus
solfataricus
Length = 267
Score = 68.9 bits (161), Expect = 8e-11
Identities = 35/102 (34%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Frame = +3
Query: 261 INKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLII-FNKDQGLTR 437
+ T + FL+++ + D+ +V + R+RAGKGKMR R+ + GPLII + + + +
Sbjct: 157 LKTTSEVEEFLKKIGVYDDVERVKERIRIRAGKGKMRGRKYKEPIGPLIIVHDSNSPIIK 216
Query: 438 AFRNIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRLD 563
A RN+ GV+++N + G H GR I+T+S+ LD
Sbjct: 217 AARNLAGVDVVNAKDVSVIHLAPGAHPGRLTIYTESSIKILD 258
>UniRef50_Q3LWC7 Cluster: Ribosomal protein L4A; n=1; Bigelowiella
natans|Rep: Ribosomal protein L4A - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 278
Score = 63.7 bits (148), Expect = 3e-09
Identities = 29/94 (30%), Positives = 45/94 (47%)
Frame = +1
Query: 1 ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXX 180
ARIPR++G GT ++GQGA NMCRGGR+F ++W+
Sbjct: 75 ARIPRIKGSGTRKAGQGALANMCRGGRLFGNRNYSKKWNIKTNRKVKVSAFKTALLSTLF 134
Query: 181 XXXXQARGHIIEKIPELPMVVADKVKRSTRPNRL 282
+RGH ++ + PM++ +K P+ L
Sbjct: 135 ETLVVSRGHSLKDVKNFPMIIDSILKYIWHPSEL 168
>UniRef50_P60847 Cluster: 50S ribosomal protein L4P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L4P -
Nanoarchaeum equitans
Length = 268
Score = 63.7 bits (148), Expect = 3e-09
Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Frame = +3
Query: 255 QEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNK-DQGL 431
+++ KTK+ L +L ++ +VY+ +R RAGKGK R R I+RKGPLI+ N ++ L
Sbjct: 160 EQLRKTKEIQQLLLKLGLEKELERVYEIKR-RAGKGKRRGRAYIERKGPLIVVNDYNEQL 218
Query: 432 TRAFRNIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRL 560
+A NIPG+++ V L G GR +I ++ A L
Sbjct: 219 FKAVDNIPGLDIEEVPNLNVELLAPGAKPGRLLIISKDALETL 261
>UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 253
Score = 61.3 bits (142), Expect = 2e-08
Identities = 26/36 (72%), Positives = 33/36 (91%)
Frame = +3
Query: 267 KTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRN 374
KT++AV+ L++LKAW+DI KVY SQR+RAGKGKMRN
Sbjct: 26 KTEEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRN 61
>UniRef50_Q9YFM1 Cluster: 50S ribosomal protein L4P; n=8;
Archaea|Rep: 50S ribosomal protein L4P - Aeropyrum
pernix
Length = 272
Score = 57.2 bits (132), Expect = 3e-07
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Frame = +3
Query: 258 EINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG-LT 434
+I+ ++A L + + D+L+ + +R AGKGKMR RR K L + + L
Sbjct: 162 KISTAREARSLLESVGVYEDVLRAKEGKRYNAGKGKMRGRRYKVPKSVLFVLEDPRSPLA 221
Query: 435 RAFRNIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRLDPLF 572
A + +PGV+++ L GGH GR I+T A L F
Sbjct: 222 LAVKGMPGVDVVTPTLLSVLHLAPGGHPGRLTIYTTEALKLLSRRF 267
>UniRef50_P12735 Cluster: 50S ribosomal protein L4P; n=1; Haloarcula
marismortui|Rep: 50S ribosomal protein L4P - Haloarcula
marismortui (Halobacterium marismortui)
Length = 246
Score = 47.6 bits (108), Expect = 2e-04
Identities = 26/102 (25%), Positives = 55/102 (53%)
Frame = +3
Query: 255 QEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLT 434
+++ KT++ V L L +DI + ++ +++AG+G R R+ +R ++ D+ T
Sbjct: 145 EDLVKTQEVVSLLEALDVHADIDRADET-KIKAGQGSARGRK-YRRPASILFVTSDEPST 202
Query: 435 RAFRNIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRL 560
A RN+ G ++ +++ + GG GR ++T+SA +
Sbjct: 203 AA-RNLAGADVATASEVNTEDLAPGGAPGRLTVFTESALAEV 243
>UniRef50_A0RVX5 Cluster: Ribosomal protein L4; n=2;
Thermoprotei|Rep: Ribosomal protein L4 - Cenarchaeum
symbiosum
Length = 271
Score = 42.7 bits (96), Expect = 0.006
Identities = 27/94 (28%), Positives = 41/94 (43%)
Frame = +1
Query: 1 ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXX 180
ARI R++GGG R G+ RGGR P K + H
Sbjct: 70 ARIARMKGGGGRRRGEAGEVASIRGGRQAHPPKVQKVIHKKINKKEKKLALCSAIAATAS 129
Query: 181 XXXXQARGHIIEKIPELPMVVADKVKRSTRPNRL 282
RGHII+ I ELP+V++D ++ ++ + +
Sbjct: 130 KSTVAGRGHIIDGI-ELPIVISDDIESVSKASEV 162
>UniRef50_Q4FXU7 Cluster: Putative uncharacterized protein; n=2;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major strain Friedlin
Length = 534
Score = 41.5 bits (93), Expect = 0.014
Identities = 18/35 (51%), Positives = 20/35 (57%)
Frame = +3
Query: 27 WYS*VRSGCLR*HVSWWTYVRPHEALAALAPSRQP 131
W VR C+R HV WW +VR E L LAP QP
Sbjct: 134 WNEHVRRRCVRQHVPWWPHVRADEDLPPLAPQDQP 168
Score = 35.9 bits (79), Expect = 0.69
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = +2
Query: 332 QVSASSCW*G*NAQPSSYPA*GAPHNLQQGSGSD---SRLPQHPRCGAPEC*QAEXXXXX 502
+++ CW +AQP P GAP + G +R+PQH R G EC +AE
Sbjct: 236 RLARDPCWPRQDAQP---PLRGAPRS-DAGDAEQQGHARVPQHLRAGPGECERAEPAAPG 291
Query: 503 XXXXXXXFRHLDSVRIRQA 559
R LD+V +R A
Sbjct: 292 ARWPRWPLRDLDAVCVRAA 310
>UniRef50_Q5NB71 Cluster: Putative uncharacterized protein
P0431F01.18; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
P0431F01.18 - Oryza sativa subsp. japonica (Rice)
Length = 320
Score = 35.5 bits (78), Expect = 0.91
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +1
Query: 1 ARIPRVRGGGTHRSGQGAFGNMCRGG 78
AR PR GGG HR GA G + RGG
Sbjct: 201 ARRPRAAGGGKHRGAHGANGGVARGG 226
>UniRef50_A1FG00 Cluster: Putative uncharacterized protein; n=1;
Pseudomonas putida W619|Rep: Putative uncharacterized
protein - Pseudomonas putida W619
Length = 852
Score = 33.5 bits (73), Expect = 3.7
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +2
Query: 101 PGGVGTVASTSDSGERPWRQPLLLPASQRSFRLEDTLLKRFPSFP 235
P V +V SD G WRQ L + + FRL LK P+ P
Sbjct: 321 PAFVSSVVKVSDRGPYTWRQALAISDAALKFRLNIGKLKASPALP 365
>UniRef50_UPI0000F2E6E2 Cluster: PREDICTED: hypothetical protein;
n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
protein - Monodelphis domestica
Length = 293
Score = 32.7 bits (71), Expect = 6.4
Identities = 18/37 (48%), Positives = 19/37 (51%)
Frame = +3
Query: 87 RPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG 197
RP A AA P RQ P E GGS Y P+ RSG
Sbjct: 122 RPGPAQAARPPPRQWPCTECPGGGSGVVYHLPTERSG 158
>UniRef50_Q6LFN6 Cluster: Putative uncharacterized protein; n=1;
Plasmodium falciparum 3D7|Rep: Putative uncharacterized
protein - Plasmodium falciparum (isolate 3D7)
Length = 592
Score = 32.3 bits (70), Expect = 8.5
Identities = 23/70 (32%), Positives = 32/70 (45%)
Frame = +3
Query: 261 INKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRA 440
I K KQ I + + + L +Y RLR GKG R ++K NK+ L A
Sbjct: 387 IKKKKQTKINKYNINIFDEFLDIYLLFRLRGGKGGFGANLRNKKKKKKKKKNKNDLLLDA 446
Query: 441 FRNIPGVELL 470
R+I G +L
Sbjct: 447 SRSINGHRIL 456
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 563,018,532
Number of Sequences: 1657284
Number of extensions: 11137744
Number of successful extensions: 38329
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 35877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38156
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39987623712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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