Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021895
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   151   7e-38
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   151   9e-38
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    27   2.6  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    26   3.5  
SPBC29A3.02c |his7||phosphoribosyl-AMP cyclohydrolase/phosphorib...    26   4.6  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  151 bits (366), Expect = 7e-38
 Identities = 65/108 (60%), Positives = 87/108 (80%)
 Frame = +3

Query: 255 QEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLT 434
           Q   KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+RNRR +QR+GPL++FN+D G+ 
Sbjct: 159 QSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDTGIV 218

Query: 435 RAFRNIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRLDPLFGS 578
           +AFRNIPGVE++NV +L   +   GGHLGRFVIWT+SAFG LD +FGS
Sbjct: 219 KAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGS 266



 Score =  101 bits (243), Expect = 6e-23
 Identities = 48/86 (55%), Positives = 53/86 (61%)
 Frame = +1

Query: 1   ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXX 180
           ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH                     
Sbjct: 74  ARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGV 133

Query: 181 XXXXQARGHIIEKIPELPMVVADKVK 258
                ARGH IE+IPE+P+VV D V+
Sbjct: 134 PSLLLARGHRIEEIPEVPLVVDDAVQ 159


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  151 bits (365), Expect = 9e-38
 Identities = 65/108 (60%), Positives = 87/108 (80%)
 Frame = +3

Query: 255 QEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLT 434
           Q   KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+RNRR +QR+GPL++FN+D G+ 
Sbjct: 159 QSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDAGIV 218

Query: 435 RAFRNIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRLDPLFGS 578
           +AFRNIPGVE++NV +L   +   GGHLGRFVIWT+SAFG LD +FGS
Sbjct: 219 KAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGS 266



 Score =  101 bits (243), Expect = 6e-23
 Identities = 48/86 (55%), Positives = 53/86 (61%)
 Frame = +1

Query: 1   ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXX 180
           ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH                     
Sbjct: 74  ARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGV 133

Query: 181 XXXXQARGHIIEKIPELPMVVADKVK 258
                ARGH IE+IPE+P+VV D V+
Sbjct: 134 PSLLLARGHRIEEIPEVPLVVDDAVQ 159


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +1

Query: 202 GHIIEKIPE-LPMVVADKVKRSTR 270
           G++I  IP  LP+ VA+K+K+S R
Sbjct: 650 GYVIYDIPRALPLKVAEKIKKSLR 673


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
 Frame = +3

Query: 300 LKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRN--IPGVELLN 473
           +K W D+L++ +SQRL   + K+     + RK   II    Q      +N  +      N
Sbjct: 370 VKIWRDVLELGQSQRLPPEQLKLIG--MLYRKHLQIILQHRQQQLNKIQNARMNSQNAPN 427

Query: 474 VNKLKPPEAGSGGHLGRFVIWTQSAFGR 557
            NKL  P+  + G+   F   +Q AF +
Sbjct: 428 TNKLGNPQPDNTGNPQAF---SQQAFAQ 452


>SPBC29A3.02c |his7||phosphoribosyl-AMP
           cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase
           His7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 296 PQEDDSLFGLVDLLTLSATTMGSSGIFSIM 207
           P E+     L DL+ +SA T    G+FS +
Sbjct: 186 PAEEPKKLSLADLILISANTDREDGLFSTL 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,165,450
Number of Sequences: 5004
Number of extensions: 40461
Number of successful extensions: 126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)