Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021895
(579 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 116 1e-26
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 114 4e-26
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127... 30 1.2
06_01_0017 + 189346-189561,189614-189905,190024-190043 29 3.5
02_04_0253 + 21310082-21310094,21310606-21311135 29 3.5
02_04_0249 + 21283004-21283016,21283526-21284055 29 3.5
02_04_0247 + 21273978-21273990,21274500-21275029 29 3.5
02_04_0245 + 21262645-21262754,21262851-21262997,21263100-212631... 29 3.5
02_05_0072 - 25598690-25598702,25598820-25599001,25599111-255992... 28 4.7
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 28 6.2
01_01_0878 + 6888459-6889227,6890498-6890523,6891679-6891843,689... 27 8.2
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 116 bits (279), Expect = 1e-26
Identities = 54/113 (47%), Positives = 79/113 (69%), Gaps = 1/113 (0%)
Frame = +3
Query: 243 SRQSQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD 422
S ++ I KT QA+ L+++ A++D K S +R GKGKMRNRR I RKGPLI++ +
Sbjct: 159 SDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINRKGPLIVYGTE 218
Query: 423 QG-LTRAFRNIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRLDPLFGS 578
+ +AFRN+PGV++ NV +L + GGHLGRFVIWT+SAF +L+ ++G+
Sbjct: 219 GSKIVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLEEVYGT 271
Score = 103 bits (248), Expect = 8e-23
Identities = 46/86 (53%), Positives = 54/86 (62%)
Frame = +1
Query: 1 ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXX 180
+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 78 SRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSV 137
Query: 181 XXXXQARGHIIEKIPELPMVVADKVK 258
ARGH IE +PELP+V++D +
Sbjct: 138 PSLVLARGHRIETVPELPLVISDSAE 163
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 114 bits (275), Expect = 4e-26
Identities = 53/108 (49%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
Frame = +3
Query: 255 QEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG-L 431
+ I KT Q++ L+++ A++D K S +RAGKGKMRNRR I RKGPLI++ + +
Sbjct: 162 ESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRAGKGKMRNRRYINRKGPLIVYGTEGSKV 221
Query: 432 TRAFRNIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRLDPLFG 575
+AFRN+PGV++ NV +L + GGHLGRFVIWT+ AF +LD ++G
Sbjct: 222 VKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTECAFKKLDEVYG 269
Score = 103 bits (248), Expect = 8e-23
Identities = 47/86 (54%), Positives = 54/86 (62%)
Frame = +1
Query: 1 ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXX 180
+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 77 SRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASALAATAV 136
Query: 181 XXXXQARGHIIEKIPELPMVVADKVK 258
ARGH IE +PE P+VV+D ++
Sbjct: 137 PSLVLARGHRIEGVPEFPLVVSDSIE 162
>02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,
1279204-1279336,1279425-1279551,1279788-1280284,
1280578-1280642,1280722-1280823,1281020-1281162,
1281761-1281816,1282214-1282869,1282975-1283165,
1283280-1283574,1283738-1283778,1284082-1284104,
1284173-1284369,1284472-1284581,1285309-1285639,
1285968-1286060,1286095-1286166,1286626-1286886
Length = 1788
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +3
Query: 225 RASHG-CSRQSQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP 401
RA+ G C R SQ +N + ++ + L ++S+ LK + GKG N + P
Sbjct: 1509 RAAIGLCQRNSQRLNPEESQSLWFQLLDSFSEPLKKLYGSKDVNGKGVRSNGSETSNRQP 1568
Query: 402 LIIFNKDQGLTRAFR 446
KD+G +R R
Sbjct: 1569 -----KDKGFSRKTR 1578
>06_01_0017 + 189346-189561,189614-189905,190024-190043
Length = 175
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -1
Query: 213 NNVSSSLNERWDAGSSNGCRQGR--SPLSEVDATVPTP 106
N+ +S L+ +WDAGS + SPLS V A P
Sbjct: 103 NDSTSKLSFKWDAGSCSSASSSAMYSPLSAVSAPAKAP 140
>02_04_0253 + 21310082-21310094,21310606-21311135
Length = 180
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 196 ARGHIIEKIPELPMVVADKVKR 261
AR +++EK+ ELP VAD V+R
Sbjct: 14 ARKYVLEKVDELPGEVADMVRR 35
>02_04_0249 + 21283004-21283016,21283526-21284055
Length = 180
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 196 ARGHIIEKIPELPMVVADKVKR 261
AR +++EK+ ELP VAD V+R
Sbjct: 14 ARKYVLEKVDELPGEVADMVRR 35
>02_04_0247 + 21273978-21273990,21274500-21275029
Length = 180
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 196 ARGHIIEKIPELPMVVADKVKR 261
AR +++EK+ ELP VAD V+R
Sbjct: 14 ARKYVLEKVDELPGEVADMVRR 35
>02_04_0245 +
21262645-21262754,21262851-21262997,21263100-21263156,
21263256-21263442,21264700-21264925,21265474-21266003
Length = 418
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 196 ARGHIIEKIPELPMVVADKVKR 261
AR +++EK+ ELP VAD V+R
Sbjct: 252 ARKYVLEKVDELPGEVADMVRR 273
>02_05_0072 -
25598690-25598702,25598820-25599001,25599111-25599269,
25599450-25599753,25600176-25600332,25600439-25600484
Length = 286
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -2
Query: 527 ETSKMTSGASFRRFQLVNI-QELHTGDVAEGASQTL 423
E S+MTSG S + + Q+LHT D +GA++++
Sbjct: 176 EESQMTSGTSHYTGETEAVKQDLHTADSLQGANESI 211
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 97 SWGRTYVHHDTCYRRHPDRTYEYHH 23
SWGR H D RR P R+ +HH
Sbjct: 303 SWGRD--HADNRLRRSPSRSSNFHH 325
>01_01_0878 +
6888459-6889227,6890498-6890523,6891679-6891843,
6892415-6892494,6893001-6893154,6893808-6893864,
6894103-6894170,6894238-6894344,6894475-6894542,
6894885-6895007
Length = 538
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 90 PHEALAALAPSRQPPTAESGLGGSRCCYR 176
P A A AP+ P A+ G GG C R
Sbjct: 15 PAAAAGAAAPTTPPAAADGGAGGESCSPR 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,332,607
Number of Sequences: 37544
Number of extensions: 348176
Number of successful extensions: 1499
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1494
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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