Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021895
         (579 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               110   7e-25
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_45700| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)                 28   4.8  
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)                     28   4.8  
SB_8252| Best HMM Match : rve (HMM E-Value=0.13)                       28   4.8  
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)                 28   6.3  
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)           28   6.3  
SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_23808| Best HMM Match : zf-AN1 (HMM E-Value=5.5)                    27   8.4  
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)            27   8.4  
SB_23350| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     27   8.4  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  110 bits (265), Expect = 7e-25
 Identities = 50/90 (55%), Positives = 58/90 (64%)
 Frame = +1

Query: 1   ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXX 180
           ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH                     
Sbjct: 71  ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVNVQQRRFAVCSALAASAL 130

Query: 181 XXXXQARGHIIEKIPELPMVVADKVKRSTR 270
                ARGH IEKI E+P+V++D ++  T+
Sbjct: 131 PALIMARGHRIEKIAEVPLVISDAIESVTK 160



 Score =  107 bits (256), Expect = 9e-24
 Identities = 49/90 (54%), Positives = 66/90 (73%)
 Frame = +3

Query: 255 QEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLT 434
           + + KT  AV  L+ + A+ D+ K   S+++RAGKGKMRNRR + RKGPLII+N DQGL 
Sbjct: 156 ESVTKTSAAVKLLKAVNAYEDVEKCIDSKKIRAGKGKMRNRRTVMRKGPLIIYNNDQGLR 215

Query: 435 RAFRNIPGVELLNVNKLKPPEAGSGGHLGR 524
           +AFRN+PGVEL +V++L   +   GGHLGR
Sbjct: 216 QAFRNLPGVELQHVDRLNLLKLCPGGHLGR 245


>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -3

Query: 85  TYVHHDTCYRRHPDRTYEYHHHGHA 11
           TY H DT  R+HPD     H   HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147


>SB_45700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 410

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = -2

Query: 458 TGDVAEGASQTLILVEDYE--GPLTLDTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQED 285
           T   AE A +    +E+    G +   +         STK LR + LKDI+ C+E     
Sbjct: 97  TSAAAEAALEPFQDIEETSALGQILPSSVDAVRLMKASTK-LRDIELKDIKRCIEVEDTA 155

Query: 284 DSLFGLVDLLTL 249
             +F L+ + TL
Sbjct: 156 FVVFNLLAITTL 167


>SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)
          Length = 506

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = -1

Query: 504 SQLQEVSAC*HSGAPHRGCCGRRESDPDPC*RL*GAPYAGYDDGC 370
           SQ    +AC + G PH G CG R      C    G  Y+     C
Sbjct: 138 SQACNRNACRNGGTPHAGRCGCRAGFTGTCCEHVGGAYSDCSHQC 182


>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
          Length = 193

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 76  HHDTCYRRHPDRTYEYHHH 20
           HH   YR H  + Y +HHH
Sbjct: 96  HHHQHYRHHRHQHYRHHHH 114


>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
          Length = 264

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 82  YVHHDTCYRRHPDRTYEYHHHGH 14
           Y HH   +RR   R + +HHH H
Sbjct: 233 YHHHHHHHRRRRRRRHHHHHHHH 255


>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
          Length = 839

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 76  HHDTCYRRHPDRTYEYHHH 20
           HH   + RH  R + YHHH
Sbjct: 570 HHHLHHHRHHHRHHHYHHH 588


>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
          Length = 1779

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 76  HHDTCYRRHPDRTYEYHHHGH 14
           HH   + RH DR + + HH H
Sbjct: 340 HHRNKHYRHHDRNHHHRHHHH 360


>SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 664

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 85  TYVHHDTCYRRHPDRTYEYHHHGHA 11
           TY H DT   +HPD     H   HA
Sbjct: 323 TYTHQDTQMHKHPDTQMYVHAPRHA 347


>SB_23808| Best HMM Match : zf-AN1 (HMM E-Value=5.5)
          Length = 165

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -2

Query: 458 TGDVAEGASQTLILVEDYE--GPLTLDTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQED 285
           T   AE A +    +E+    G +   +      T  STK LR + LKDI  C+E    +
Sbjct: 99  TSAAAEAALEPFQDIEETSALGQILPSSVDAVRLTKASTK-LRDIELKDIERCIEV---E 154

Query: 284 DSLFG 270
           D+ FG
Sbjct: 155 DTAFG 159


>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
          Length = 694

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -3

Query: 88  RTYVHHDTCYRRHPDRTYEYHHHGH 14
           R + HH   +  H    + +HHH H
Sbjct: 209 RHHQHHQHHHHHHHQHNHHHHHHNH 233


>SB_23350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 704

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 431 QTLILVEDYEGPLTLDTTTVAHFTLTSTKTL 339
           Q LIL+  Y   + L+T+++  F+L S KT+
Sbjct: 235 QELILIPYYTEKVALETSSLIEFSLLSAKTI 265


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 82 YVHHDTCYRRHPDRTYEYHHHGH 14
          Y HH  CY RH    + Y HH H
Sbjct: 25 YCHHRYCYYRHHHYCW-YRHHYH 46


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,430,302
Number of Sequences: 59808
Number of extensions: 348851
Number of successful extensions: 1205
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)