Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021895
         (579 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X13382-1|CAA31759.1|  407|Drosophila melanogaster protein ( Dros...   165   5e-41
AY069485-1|AAL39630.1|  401|Drosophila melanogaster LD21756p pro...   164   7e-41
AE014297-4196|AAG22173.1|  401|Drosophila melanogaster CG5502-PA...   164   7e-41
BT025959-1|ABG02203.1|  233|Drosophila melanogaster IP15855p pro...   111   7e-25
X06881-1|CAA29998.1|  123|Drosophila melanogaster protein ( Dros...   105   3e-23
DQ066624-1|AAY83339.1|  265|Drosophila melanogaster HDC10856 pro...    30   2.6  
AE014296-2257|AAF49833.1| 1544|Drosophila melanogaster CG17687-P...    29   6.0  

>X13382-1|CAA31759.1|  407|Drosophila melanogaster protein (
           Drosophila melanogastermRNA for put. ribosomal protein
           L1. ).
          Length = 407

 Score =  165 bits (400), Expect = 5e-41
 Identities = 73/112 (65%), Positives = 94/112 (83%)
 Frame = +3

Query: 243 SRQSQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD 422
           S + Q++ KTKQAVIFLRRLK W+DI KVYKSQR RAG+G MR+RRRI R+GPL++++KD
Sbjct: 158 SDEVQKVQKTKQAVIFLRRLKIWADIQKVYKSQRFRAGRGTMRDRRRIARRGPLVVYDKD 217

Query: 423 QGLTRAFRNIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRLDPLFGS 578
           +GL +AFRNIPG+E +NV+KL   +   GGH+GRFVIWT+SAF RL+ LFG+
Sbjct: 218 EGLRKAFRNIPGIETINVDKLNVLKLAPGGHVGRFVIWTESAFARLNDLFGT 269



 Score =  105 bits (253), Expect = 3e-23
 Identities = 47/87 (54%), Positives = 58/87 (66%)
 Frame = +1

Query: 1   ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXX 180
           ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK +RRWH                     
Sbjct: 77  ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVSAIAASGV 136

Query: 181 XXXXQARGHIIEKIPELPMVVADKVKR 261
               Q++GH+I+ + E P+VV+D+V++
Sbjct: 137 PALVQSKGHVIDGVSEFPLVVSDEVQK 163


>AY069485-1|AAL39630.1|  401|Drosophila melanogaster LD21756p
           protein.
          Length = 401

 Score =  164 bits (399), Expect = 7e-41
 Identities = 73/112 (65%), Positives = 94/112 (83%)
 Frame = +3

Query: 243 SRQSQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD 422
           S + Q++ KTKQAVIFLRRLK W+DI KVYKSQR RAG+G MR+RRRI R+GPL++++KD
Sbjct: 158 SDEVQKVQKTKQAVIFLRRLKIWADIQKVYKSQRFRAGRGTMRDRRRIARRGPLVVYDKD 217

Query: 423 QGLTRAFRNIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRLDPLFGS 578
           +GL +AFRNIPG+E +NV+KL   +   GGH+GRFVIWT+SAF RL+ LFG+
Sbjct: 218 EGLRKAFRNIPGIETINVDKLNLLKLAPGGHVGRFVIWTESAFARLNDLFGT 269



 Score =  105 bits (253), Expect = 3e-23
 Identities = 47/87 (54%), Positives = 58/87 (66%)
 Frame = +1

Query: 1   ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXX 180
           ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK +RRWH                     
Sbjct: 77  ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVSAIAASGV 136

Query: 181 XXXXQARGHIIEKIPELPMVVADKVKR 261
               Q++GH+I+ + E P+VV+D+V++
Sbjct: 137 PALVQSKGHVIDGVSEFPLVVSDEVQK 163


>AE014297-4196|AAG22173.1|  401|Drosophila melanogaster CG5502-PA
           protein.
          Length = 401

 Score =  164 bits (399), Expect = 7e-41
 Identities = 73/112 (65%), Positives = 94/112 (83%)
 Frame = +3

Query: 243 SRQSQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD 422
           S + Q++ KTKQAVIFLRRLK W+DI KVYKSQR RAG+G MR+RRRI R+GPL++++KD
Sbjct: 158 SDEVQKVQKTKQAVIFLRRLKIWADIQKVYKSQRFRAGRGTMRDRRRIARRGPLVVYDKD 217

Query: 423 QGLTRAFRNIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRLDPLFGS 578
           +GL +AFRNIPG+E +NV+KL   +   GGH+GRFVIWT+SAF RL+ LFG+
Sbjct: 218 EGLRKAFRNIPGIETINVDKLNLLKLAPGGHVGRFVIWTESAFARLNDLFGT 269



 Score =  105 bits (253), Expect = 3e-23
 Identities = 47/87 (54%), Positives = 58/87 (66%)
 Frame = +1

Query: 1   ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXX 180
           ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK +RRWH                     
Sbjct: 77  ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVSAIAASGV 136

Query: 181 XXXXQARGHIIEKIPELPMVVADKVKR 261
               Q++GH+I+ + E P+VV+D+V++
Sbjct: 137 PALVQSKGHVIDGVSEFPLVVSDEVQK 163


>BT025959-1|ABG02203.1|  233|Drosophila melanogaster IP15855p
           protein.
          Length = 233

 Score =  111 bits (267), Expect = 7e-25
 Identities = 49/71 (69%), Positives = 62/71 (87%)
 Frame = +3

Query: 243 SRQSQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD 422
           S + Q++ KTKQAVIFLRRLK W+DI KVYKSQR RAG+G MR+RRRI R+GPL++++KD
Sbjct: 158 SDEVQKVQKTKQAVIFLRRLKIWADIQKVYKSQRFRAGRGTMRDRRRIARRGPLVVYDKD 217

Query: 423 QGLTRAFRNIP 455
           +GL +AFRNIP
Sbjct: 218 EGLRKAFRNIP 228



 Score =  105 bits (253), Expect = 3e-23
 Identities = 47/87 (54%), Positives = 58/87 (66%)
 Frame = +1

Query: 1   ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXX 180
           ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK +RRWH                     
Sbjct: 77  ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVSAIAASGV 136

Query: 181 XXXXQARGHIIEKIPELPMVVADKVKR 261
               Q++GH+I+ + E P+VV+D+V++
Sbjct: 137 PALVQSKGHVIDGVSEFPLVVSDEVQK 163


>X06881-1|CAA29998.1|  123|Drosophila melanogaster protein (
           Drosophila gene forribosomal protein L1 fragment. ).
          Length = 123

 Score =  105 bits (253), Expect = 3e-23
 Identities = 47/87 (54%), Positives = 58/87 (66%)
 Frame = +1

Query: 1   ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXX 180
           ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK +RRWH                     
Sbjct: 15  ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRRVNVNQRRYALVSAIAASGV 74

Query: 181 XXXXQARGHIIEKIPELPMVVADKVKR 261
               Q++GH+I+ + E P+VV+D+V++
Sbjct: 75  PALVQSKGHVIDGVSEFPLVVSDEVQK 101



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 19/28 (67%), Positives = 23/28 (82%)
 Frame = +3

Query: 243 SRQSQEINKTKQAVIFLRRLKAWSDILK 326
           S + Q++ KTKQAVIFLRRLK W+DI K
Sbjct: 96  SDEVQKVQKTKQAVIFLRRLKIWADIQK 123


>DQ066624-1|AAY83339.1|  265|Drosophila melanogaster HDC10856
           protein.
          Length = 265

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 246 GYNHGKLGNLFNNVSSSLNERWDAGSSNGCRQGR 145
           GYN G+ GN +N  +++ N   + G   G  QGR
Sbjct: 200 GYNRGRNGNNYNRGNNNSNNYNNRGGRRGRNQGR 233


>AE014296-2257|AAF49833.1| 1544|Drosophila melanogaster CG17687-PA
            protein.
          Length = 1544

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +3

Query: 417  KDQGLTRAFRNIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGR 557
            KD+ + +    +   E+  +N+ KP    +GG  GR ++W++  + R
Sbjct: 945  KDE-VIKQIMEVDDSEVKAINRRKPKTIDTGGKKGRLLLWSKEFWAR 990


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,014,030
Number of Sequences: 53049
Number of extensions: 552986
Number of successful extensions: 3092
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3072
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2296745289
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)