Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021895
(579 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 134 4e-32
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr... 29 3.2
AF016679-4|AAB66158.1| 430|Caenorhabditis elegans Hypothetical ... 28 4.2
U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical pr... 28 5.5
AF043700-6|AAB97569.2| 443|Caenorhabditis elegans Hypothetical ... 27 7.3
Z92967-2|CAB07478.1| 1101|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z82052-10|CAB04830.1| 1101|Caenorhabditis elegans Hypothetical p... 27 9.6
Z69662-9|CAA93507.2| 1782|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z69662-8|CAA93506.2| 1776|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z68214-8|CAA92449.2| 1782|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z68214-7|CAA92448.2| 1776|Caenorhabditis elegans Hypothetical pr... 27 9.6
AY396716-1|AAR29589.1| 1800|Caenorhabditis elegans DAF-15 protein. 27 9.6
AL021572-4|CAA16519.1| 1101|Caenorhabditis elegans Hypothetical ... 27 9.6
AL021507-1|CAA16430.1| 1101|Caenorhabditis elegans Hypothetical ... 27 9.6
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 134 bits (324), Expect = 4e-32
Identities = 59/112 (52%), Positives = 83/112 (74%)
Frame = +3
Query: 243 SRQSQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD 422
S + + KTK+AV+FLRR W+DI KVY S+R RAGKGK+RNR+ Q+ GP++I+ +D
Sbjct: 154 SDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLGPVVIYGQD 213
Query: 423 QGLTRAFRNIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRLDPLFGS 578
RAFRNIPGV+++NV +L + GGHLGR +IWT+SAF +LD ++G+
Sbjct: 214 AECARAFRNIPGVDVMNVERLNLLKLAPGGHLGRLIIWTESAFKKLDTIYGT 265
Score = 105 bits (253), Expect = 2e-23
Identities = 48/86 (55%), Positives = 57/86 (66%)
Frame = +1
Query: 1 ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXX 180
ARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH
Sbjct: 73 ARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGI 132
Query: 181 XXXXQARGHIIEKIPELPMVVADKVK 258
QARGH+I+++ E+P+VV+DKV+
Sbjct: 133 PALLQARGHVIDQVAEVPLVVSDKVE 158
>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
protein C29A12.4 protein.
Length = 1560
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -1
Query: 246 GYNHGKLGNL-FNNVSSSLNERWDAGSSNGCRQGRSPLSEVDATVPTP 106
GY G + N+ N VS+ + + ++A +S G G S +E+D P P
Sbjct: 614 GYT-GCIKNIRMNGVSTKIGQEFEASNSTGIELGCSLSNELDICEPNP 660
>AF016679-4|AAB66158.1| 430|Caenorhabditis elegans Hypothetical
protein T28C12.3 protein.
Length = 430
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = -2
Query: 494 RRFQLVNIQELHTG--DVAEGASQTLILVEDYEGPLTLDTTTVAHFTL 357
+ F+ ++ LH + E + + L++++ +E TL TTVA+F+L
Sbjct: 284 KHFEPETLESLHIEILEFDEDSVKELVILDQWEEAKTLSLTTVAYFSL 331
>U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical
protein F53A9.9 protein.
Length = 147
Score = 27.9 bits (59), Expect = 5.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 76 HHDTCYRRHPDRTYEYHHHGH 14
HHD +++H + ++ HHHGH
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH 139
>AF043700-6|AAB97569.2| 443|Caenorhabditis elegans Hypothetical
protein K09H9.2 protein.
Length = 443
Score = 27.5 bits (58), Expect = 7.3
Identities = 20/65 (30%), Positives = 29/65 (44%)
Frame = -2
Query: 488 FQLVNIQELHTGDVAEGASQTLILVEDYEGPLTLDTTTVAHFTLTSTKTLRLVHLKDIRP 309
F L+++ E G +EG S T+ + L D T + S T+ L+H
Sbjct: 93 FMLLSVDESVIGAFSEGQSLTIRGDSTDDAVLCTDNATFPMKIIESATTVLLLH-----K 147
Query: 308 CLEAP 294
CLEAP
Sbjct: 148 CLEAP 152
>Z92967-2|CAB07478.1| 1101|Caenorhabditis elegans Hypothetical
protein T25E12.4a protein.
Length = 1101
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 474 VNKLKPPEAGSGGHLGRFVIWTQSAFGRLDPLF 572
++KLK P G GHLG I T+ F +L +F
Sbjct: 740 IDKLKVPTEGETGHLGA-KIQTEHEFSQLYQIF 771
>Z82052-10|CAB04830.1| 1101|Caenorhabditis elegans Hypothetical
protein T25E12.4a protein.
Length = 1101
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 474 VNKLKPPEAGSGGHLGRFVIWTQSAFGRLDPLF 572
++KLK P G GHLG I T+ F +L +F
Sbjct: 740 IDKLKVPTEGETGHLGA-KIQTEHEFSQLYQIF 771
>Z69662-9|CAA93507.2| 1782|Caenorhabditis elegans Hypothetical
protein C10C5.6b protein.
Length = 1782
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +2
Query: 116 TVASTS---DSGERPWRQPLLLPASQRSFRLEDTLLKRFPSFP 235
T+A TS DS ++ +RQ LLL RSF L ++ +F P
Sbjct: 356 TIAFTSIDRDSFQKLFRQDLLLATLFRSFLLAQRVMSKFNVLP 398
>Z69662-8|CAA93506.2| 1776|Caenorhabditis elegans Hypothetical
protein C10C5.6a protein.
Length = 1776
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +2
Query: 116 TVASTS---DSGERPWRQPLLLPASQRSFRLEDTLLKRFPSFP 235
T+A TS DS ++ +RQ LLL RSF L ++ +F P
Sbjct: 356 TIAFTSIDRDSFQKLFRQDLLLATLFRSFLLAQRVMSKFNVLP 398
>Z68214-8|CAA92449.2| 1782|Caenorhabditis elegans Hypothetical
protein C10C5.6b protein.
Length = 1782
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +2
Query: 116 TVASTS---DSGERPWRQPLLLPASQRSFRLEDTLLKRFPSFP 235
T+A TS DS ++ +RQ LLL RSF L ++ +F P
Sbjct: 356 TIAFTSIDRDSFQKLFRQDLLLATLFRSFLLAQRVMSKFNVLP 398
>Z68214-7|CAA92448.2| 1776|Caenorhabditis elegans Hypothetical
protein C10C5.6a protein.
Length = 1776
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +2
Query: 116 TVASTS---DSGERPWRQPLLLPASQRSFRLEDTLLKRFPSFP 235
T+A TS DS ++ +RQ LLL RSF L ++ +F P
Sbjct: 356 TIAFTSIDRDSFQKLFRQDLLLATLFRSFLLAQRVMSKFNVLP 398
>AY396716-1|AAR29589.1| 1800|Caenorhabditis elegans DAF-15 protein.
Length = 1800
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +2
Query: 116 TVASTS---DSGERPWRQPLLLPASQRSFRLEDTLLKRFPSFP 235
T+A TS DS ++ +RQ LLL RSF L ++ +F P
Sbjct: 380 TIAFTSIDRDSFQKLFRQDLLLATLFRSFLLAQRVMSKFNVLP 422
>AL021572-4|CAA16519.1| 1101|Caenorhabditis elegans Hypothetical
protein T25E12.4a protein.
Length = 1101
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 474 VNKLKPPEAGSGGHLGRFVIWTQSAFGRLDPLF 572
++KLK P G GHLG I T+ F +L +F
Sbjct: 740 IDKLKVPTEGETGHLGA-KIQTEHEFSQLYQIF 771
>AL021507-1|CAA16430.1| 1101|Caenorhabditis elegans Hypothetical
protein T25E12.4a protein.
Length = 1101
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 474 VNKLKPPEAGSGGHLGRFVIWTQSAFGRLDPLF 572
++KLK P G GHLG I T+ F +L +F
Sbjct: 740 IDKLKVPTEGETGHLGA-KIQTEHEFSQLYQIF 771
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,391,155
Number of Sequences: 27780
Number of extensions: 245739
Number of successful extensions: 792
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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