Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021895
(579 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 114 3e-26
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 113 8e-26
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 30 0.97
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 30 0.97
At2g33590.1 68415.m04117 cinnamoyl-CoA reductase family similar ... 29 3.0
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 28 5.2
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 114 bits (275), Expect = 3e-26
Identities = 54/113 (47%), Positives = 77/113 (68%), Gaps = 1/113 (0%)
Frame = +3
Query: 243 SRQSQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD 422
S ++ + KT A+ L+++ A+ D K S +R GKGKMRNRR I RKGPL++F +
Sbjct: 161 SDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVFGTE 220
Query: 423 QG-LTRAFRNIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRLDPLFGS 578
+ +AFRN+PGVEL +V +L + GGHLGRFVIWT+SAF +L+ ++GS
Sbjct: 221 GAKIVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGS 273
Score = 102 bits (245), Expect = 2e-22
Identities = 46/86 (53%), Positives = 53/86 (61%)
Frame = +1
Query: 1 ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXX 180
+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 80 SRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAV 139
Query: 181 XXXXQARGHIIEKIPELPMVVADKVK 258
ARGH IE +PE+P+VV+D +
Sbjct: 140 PALVMARGHKIENVPEMPLVVSDSAE 165
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 113 bits (272), Expect = 8e-26
Identities = 53/113 (46%), Positives = 77/113 (68%), Gaps = 1/113 (0%)
Frame = +3
Query: 243 SRQSQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD 422
S ++ + KT A+ L+++ A+ D K S +R GKGKMRNRR I RKGPL+++ +
Sbjct: 160 SDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVYGTE 219
Query: 423 QG-LTRAFRNIPGVELLNVNKLKPPEAGSGGHLGRFVIWTQSAFGRLDPLFGS 578
+ +AFRN+PGVEL +V +L + GGHLGRFVIWT+SAF +L+ ++GS
Sbjct: 220 GSKIVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGS 272
Score = 102 bits (245), Expect = 2e-22
Identities = 46/86 (53%), Positives = 53/86 (61%)
Frame = +1
Query: 1 ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXX 180
+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 79 SRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAV 138
Query: 181 XXXXQARGHIIEKIPELPMVVADKVK 258
ARGH IE +PE+P+VV+D +
Sbjct: 139 PALVMARGHKIENVPEMPLVVSDSAE 164
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 30.3 bits (65), Expect = 0.97
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = +3
Query: 72 WWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG*RTHY*KDSRASHGCSRQ 251
WW +V LA+ APS P + L SR C P ++S + H D+ R
Sbjct: 465 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC-PSPLSQSSKQHHIRLDNHFDTSTPRS 523
Query: 252 SQ 257
S+
Sbjct: 524 SR 525
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 30.3 bits (65), Expect = 0.97
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = +3
Query: 72 WWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG*RTHY*KDSRASHGCSRQ 251
WW +V LA+ APS P + L SR C P ++S + H D+ R
Sbjct: 464 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC-PSPLSQSSKQHHIRLDNHFDTSTPRS 522
Query: 252 SQ 257
S+
Sbjct: 523 SR 524
>At2g33590.1 68415.m04117 cinnamoyl-CoA reductase family similar to
cinnamoyl-CoA reductase from Pinus taeda [GI:17978649],
Eucalyptus gunnii [GI:2058311]
Length = 321
Score = 28.7 bits (61), Expect = 3.0
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Frame = -2
Query: 395 LTLDTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLF--GLVDLLTLSATTMGSSG 222
L L H T+ + HLK LE + LF L+D +L + G SG
Sbjct: 25 LLLSKDYFVHGTVRDPDNEKYAHLKK----LEKAGDKLKLFKADLLDYGSLQSAIAGCSG 80
Query: 221 IFSIMCPLA*TSAGTP 174
+F + CP+ S P
Sbjct: 81 VFHVACPVPPASVPNP 96
>At5g17650.1 68418.m02069 glycine/proline-rich protein
glycine/proline-rich protein GPRP - Arabidopsis
thaliana, EMBL:X84315
Length = 173
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -3
Query: 76 HHDTCYRRHPDRTYEYHHHGHAEF 5
HH Y H Y Y +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,100,304
Number of Sequences: 28952
Number of extensions: 239297
Number of successful extensions: 881
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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