Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021894
         (612 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    32   0.003
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    24   0.88 
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    24   0.88 
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    24   0.88 
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   2.0  
AF264718-1|AAF75271.1|  125|Tribolium castaneum putative cytochr...    23   2.7  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    22   3.5  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    22   3.5  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   8.2  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   8.2  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    21   8.2  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   8.2  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 32.3 bits (70), Expect = 0.003
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 415 PTAESGLGGSVAATGVPALVQARGHIIEKIPDFP 516
           P+  SGLGG ++   +PAL    GH +E +P FP
Sbjct: 81  PSLSSGLGGGLSGMPMPALGFGLGHPLESVP-FP 113


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 420 SGERPWRQRCCYRRPSTRSG*RTH 491
           +GERP++ + C R  +T+   +TH
Sbjct: 158 TGERPFKCKICGRAFTTKGNLKTH 181


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 420 SGERPWRQRCCYRRPSTRSG*RTH 491
           SGE+P+R   C RR S  S   TH
Sbjct: 45  SGEKPFRCPVCDRRFSQSSSVTTH 68



 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 420 SGERPWRQRCCYRRPSTRS 476
           SGERP+R R C +  S  S
Sbjct: 73  SGERPYRCRLCKKAFSDSS 91


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 420 SGERPWRQRCCYRRPSTRSG*RTH 491
           SGE+P+R   C RR S  S   TH
Sbjct: 301 SGEKPFRCPVCDRRFSQSSSVTTH 324



 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 420 SGERPWRQRCCYRRPSTRS 476
           SGERP+R R C +  S  S
Sbjct: 329 SGERPYRCRLCKKAFSDSS 347


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +1

Query: 493 IEKIP--DFPWL*PTKSRRSTRPNRLSSS*GASRHGLISLRC 612
           + KIP  +FP    + +  S  P   SS  G++   ++SL C
Sbjct: 211 VPKIPPAEFPTTSSSSALESPNPASRSSCLGSNTSSMLSLNC 252


>AF264718-1|AAF75271.1|  125|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q6 protein.
          Length = 125

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 494 LKRFPTSPGCSRQSPGDQQDQTGCHLPE 577
           L+ FP+ P  SR +  D   +TG  +PE
Sbjct: 55  LRLFPSVPFISRYASEDFVTKTGNTIPE 82


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +1

Query: 499 KIP--DFPWL*PTKSRRSTRPNRLSSS*GASRHGLISLRC 612
           KIP  +FP    + +  S  P   SS  G++   ++SL C
Sbjct: 2   KIPPAEFPTTSSSSALESPNPASRSSCLGSNTSSMLSLNC 41


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +1

Query: 499 KIP--DFPWL*PTKSRRSTRPNRLSSS*GASRHGLISLRC 612
           KIP  +FP    + +  S  P   SS  G++   ++SL C
Sbjct: 2   KIPPAEFPTTSSSSALESPNPASRSSCLGSNTSSMLSLNC 41


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -1

Query: 561 PVWSC*SPGLC 529
           PVW   +PG+C
Sbjct: 619 PVWCAQNPGMC 629


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +2

Query: 137 PVRVQGAHTSGPGQ*CSRFYVQELEAAL 220
           PVR+ G H  G    C++      E AL
Sbjct: 196 PVRIMGVHRPGFDNDCNKNTSTSKEIAL 223


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 65  IGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGP 172
           +G P +  G   K  + +  S  PP+ + GA  +GP
Sbjct: 287 LGIPAY--GRAWKMDEDSSISGVPPLSIDGALEAGP 320


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/15 (46%), Positives = 7/15 (46%)
 Frame = +1

Query: 268 YRTCCRPNSACPWWW 312
           YR C RP      WW
Sbjct: 256 YRYCYRPYPVYNQWW 270


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,507
Number of Sequences: 336
Number of extensions: 2956
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)