Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021894
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   103   3e-23
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   103   3e-23
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    26   3.7  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   3.7  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    26   3.7  
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    25   6.5  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  103 bits (246), Expect = 3e-23
 Identities = 42/49 (85%), Positives = 45/49 (91%)
 Frame = +2

Query: 254 SESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 400
           +ESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 64  AESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWH 112



 Score = 82.6 bits (195), Expect = 4e-17
 Identities = 38/64 (59%), Positives = 48/64 (75%)
 Frame = +3

Query: 63  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 242
           ++ ARP VS+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 243 HQTS 254
           HQTS
Sbjct: 60  HQTS 63



 Score = 41.9 bits (94), Expect = 7e-05
 Identities = 18/34 (52%), Positives = 25/34 (73%)
 Frame = +3

Query: 510 LPLVVADKVQEINKTKQAVIFLRRLKAWSDILKV 611
           +PLVV D VQ   KTK+AV  L+ +KA+ D++KV
Sbjct: 150 VPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKV 183



 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 16/28 (57%), Positives = 23/28 (82%)
 Frame = +1

Query: 433 LGGSVAATGVPALVQARGHIIEKIPDFP 516
           +  +VAA+GVP+L+ ARGH IE+IP+ P
Sbjct: 124 IASAVAASGVPSLLLARGHRIEEIPEVP 151


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  103 bits (246), Expect = 3e-23
 Identities = 42/49 (85%), Positives = 45/49 (91%)
 Frame = +2

Query: 254 SESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 400
           +ESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 64  AESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWH 112



 Score = 83.4 bits (197), Expect = 2e-17
 Identities = 39/64 (60%), Positives = 48/64 (75%)
 Frame = +3

Query: 63  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 242
           ++ ARP VS+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 243 HQTS 254
           HQTS
Sbjct: 60  HQTS 63



 Score = 41.5 bits (93), Expect = 9e-05
 Identities = 18/34 (52%), Positives = 25/34 (73%)
 Frame = +3

Query: 510 LPLVVADKVQEINKTKQAVIFLRRLKAWSDILKV 611
           +PLVV D VQ   KTK+AV  L+ +KA+ D++KV
Sbjct: 150 VPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKV 183



 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 16/28 (57%), Positives = 23/28 (82%)
 Frame = +1

Query: 433 LGGSVAATGVPALVQARGHIIEKIPDFP 516
           +  +VAA+GVP+L+ ARGH IE+IP+ P
Sbjct: 124 ISSAVAASGVPSLLLARGHRIEEIPEVP 151


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 62  SIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGP 172
           SI SP+ SVG   +  D +  S + P+ + G  +  P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 124 APCTVSLFSEYTDTKGRATDRLISLL 47
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +2

Query: 137 PVRVQGAHTSGPGQ*CSRFYVQELEAALLREQ 232
           PV VQG HT G      +F  Q L A +L  Q
Sbjct: 29  PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60


>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 238 LVTKPVRIMGYRTCCRPNSACP 303
           L  +P R++     C+PN  CP
Sbjct: 410 LAKRPTRVLHCEKTCKPNPYCP 431


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,438,460
Number of Sequences: 5004
Number of extensions: 47141
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)