Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021894
(612 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 111 3e-25
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042) 36 0.034
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05) 35 0.045
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 32 0.42
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 31 0.74
SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) 29 3.0
SB_56636| Best HMM Match : Toxin_4 (HMM E-Value=2.4) 29 3.9
SB_5942| Best HMM Match : Sec7 (HMM E-Value=3.1e-09) 29 3.9
SB_4035| Best HMM Match : DUF1279 (HMM E-Value=0.15) 29 3.9
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 29 3.9
SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_50961| Best HMM Match : Trypsin (HMM E-Value=0) 28 5.2
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8) 28 5.2
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_8252| Best HMM Match : rve (HMM E-Value=0.13) 28 5.2
SB_3278| Best HMM Match : ORC2 (HMM E-Value=0) 28 5.2
SB_43404| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08) 28 6.9
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29) 28 6.9
SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_12542| Best HMM Match : Collagen (HMM E-Value=1.3) 27 9.1
>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
Length = 299
Score = 111 bits (268), Expect = 3e-25
Identities = 46/49 (93%), Positives = 48/49 (97%)
Frame = +2
Query: 254 SESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 400
+ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 61 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWH 109
Score = 76.2 bits (179), Expect = 2e-14
Identities = 36/61 (59%), Positives = 46/61 (75%)
Frame = +3
Query: 72 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 251
ARP+++V++E E+ LP VFKAPIRPDLVN VH +++KN RQPY V+K AGHQT
Sbjct: 2 ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQT 59
Query: 252 S 254
S
Sbjct: 60 S 60
Score = 34.3 bits (75), Expect = 0.079
Identities = 14/25 (56%), Positives = 20/25 (80%)
Frame = +1
Query: 442 SVAATGVPALVQARGHIIEKIPDFP 516
++AA+ +PAL+ ARGH IEKI + P
Sbjct: 124 ALAASALPALIMARGHRIEKIAEVP 148
>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
Length = 628
Score = 35.5 bits (78), Expect = 0.034
Identities = 19/54 (35%), Positives = 22/54 (40%)
Frame = +2
Query: 233 GGWSPNQSESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 394
GGW WG G+ + R GGG R G +G M GG P W R
Sbjct: 14 GGWGQGPGGGWGRGQG-GGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 66
Score = 27.5 bits (58), Expect = 9.1
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Frame = +2
Query: 233 GGWSPNQSESWGT--GRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 388
GG WG G + R P GGG R G +G M GG P + W
Sbjct: 54 GGMGRGPGGGWGRMQGGGMGRGP---GGGLGRGPGGGWGRMQEGGMGRGPGQGW 104
>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
Length = 1098
Score = 35.1 bits (77), Expect = 0.045
Identities = 19/54 (35%), Positives = 22/54 (40%)
Frame = +2
Query: 233 GGWSPNQSESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 394
GGW WG G+ + R GGG R G +G M GG P W R
Sbjct: 258 GGWGQGPGGGWGRGQGRG-MGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 31.9 bits (69), Expect = 0.42
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 359 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVRY 267
HH RH R + +HHH H E+ R+H RY
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH-RY 353
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 31.1 bits (67), Expect = 0.74
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 245 PNQSESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 364
P SE +G ++ R PR RGGG G G G RGGR
Sbjct: 982 PTPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022
>SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = -2
Query: 368 TYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVRYPMIRTGLVTSLLAHAVGLPRVLGHR 192
+Y HH +RRH YHHH H + H + +I T L+ S+++ A+ + ++ +R
Sbjct: 261 SYYHHHH-HRRHHLN--HYHHHYHLD---DHFIFIIIITTLIVSIISVAITVHILIPYR 313
>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -2
Query: 368 TYVHHDTCYRRHPDRTYEYHHHGHA 294
TY H DT R+HPD H HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147
>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
Length = 694
Score = 29.1 bits (62), Expect = 3.0
Identities = 9/35 (25%), Positives = 14/35 (40%)
Frame = -2
Query: 371 RTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVRY 267
R + HH + H + +HHH H H +
Sbjct: 209 RHHQHHQHHHHHHHQHNHHHHHHNHHHHHHHHYHH 243
>SB_56636| Best HMM Match : Toxin_4 (HMM E-Value=2.4)
Length = 434
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 224 REQGGWSPNQSESWGTGRAVARIPRVRGGG 313
R + W P +S +W +A+ P VR GG
Sbjct: 120 RPEAAWGPKRSGAWLGSQALVPQPAVRSGG 149
>SB_5942| Best HMM Match : Sec7 (HMM E-Value=3.1e-09)
Length = 304
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/45 (22%), Positives = 20/45 (44%)
Frame = -2
Query: 365 YVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVRYPMIRTGLVTSLL 231
Y HH + H + +HHH H + + T ++T+++
Sbjct: 158 YYHHHLLHHHHHHWHHHHHHHRHHHHSFTTIATTTVITTIITTVI 202
>SB_4035| Best HMM Match : DUF1279 (HMM E-Value=0.15)
Length = 1575
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +2
Query: 455 PASQHSFRLEDTLLKRFPTSPGCSRQSPGDQQDQTGC 565
PA QH RL++++ ++ C++ +P D C
Sbjct: 416 PACQHVTRLDESMFPKYINELSCAKSNPAAYADSIRC 452
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = -2
Query: 371 RTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVRYPMIR 255
R Y HH C H Y Y HH H + R H YP R
Sbjct: 15 RCYRHHHYCCYCHHRYCY-YRHH-HYCWYRHHYHYPCYR 51
>SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 664
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = -2
Query: 368 TYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVRYPMIRT 252
TY H DT +HPD H HA R R+ RT
Sbjct: 323 TYTHQDTQMHKHPDTQMYVHAPRHAN-ARGAPRHAYART 360
>SB_50961| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 1007
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +1
Query: 190 FLCPRTRGSPTA*ARRLVTKPVRIMGYRTC---CRPNSAC 300
+LC +T G+ RL PV I G RTC R N+ C
Sbjct: 220 YLCSKTCGNGVRTRYRLCNNPVPINGGRTCSGESRENAPC 259
>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
Length = 193
Score = 28.3 bits (60), Expect = 5.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 359 HHDTCYRRHPDRTYEYHHH 303
HH YR H + Y +HHH
Sbjct: 96 HHHQHYRHHRHQHYRHHHH 114
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 139 GRGLAAPCTVSLFSEYTDTKGRATDRLI 56
G+GL C+V+L S Y T+G+ RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190
>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
Length = 264
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 365 YVHHDTCYRRHPDRTYEYHHHGH 297
Y HH +RR R + +HHH H
Sbjct: 233 YHHHHHHHRRRRRRRHHHHHHHH 255
>SB_3278| Best HMM Match : ORC2 (HMM E-Value=0)
Length = 459
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 455 PASQHSFRLEDTLLKRFPTSPGCSRQSPGDQQDQTGCH 568
P QH +L DT +R P P + + D D TG H
Sbjct: 34 PKDQH--KLRDTRQRRLPPRPQPIKPASKDSDDDTGSH 69
>SB_43404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -2
Query: 371 RTYVH-HDTCYRRHPDRTYEYHHHGHAEFGRQHVRY 267
R Y H CYRR R + YHHH + +RY
Sbjct: 216 RCYYHCRRRCYRRR--RRHFYHHHPRRYHNHRRLRY 249
>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
Length = 839
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 359 HHDTCYRRHPDRTYEYHHH 303
HH + RH R + YHHH
Sbjct: 570 HHHLHHHRHHHRHHHYHHH 588
>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
Length = 1779
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 359 HHDTCYRRHPDRTYEYHHHGH 297
HH + RH DR + + HH H
Sbjct: 340 HHRNKHYRHHDRNHHHRHHHH 360
>SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -2
Query: 323 TYEYHHHGHAEFGRQHVRYPMI-RTGLVTSLLAHAVGLP-RVLGHRNVN 183
+Y++HHHG E Q V I RT + L +H P RV+G ++
Sbjct: 21 SYQWHHHGTGETDDQPVTTTRITRTWVNRRLNSHRTIKPSRVIGRAQIH 69
>SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = -2
Query: 323 TYEYHHHGHAEFGRQHVRYPMIRTGLVTSLLAHAVGLPRVLGHRNVNIIDQVRTYGRLEH 144
+Y+ H G + R+H + + T S GL +V + IID+ +G +
Sbjct: 26 SYKKEHRGLRKVSRKHAQRILDETAGHASYKKEHRGLRKVSREQAQRIIDETAGHGSYKK 85
Query: 143 EREGL 129
E GL
Sbjct: 86 EYRGL 90
>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 344 YRRHPDRTYEYHHHGHAEFGRQHVRYPMI 258
Y +HP T+ YH H R H ++P +
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQV 259
>SB_12542| Best HMM Match : Collagen (HMM E-Value=1.3)
Length = 532
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 259 IMGYRTCCRPNSACPWWWYS*VR-SGC 336
I+ +R CCR N C W+W R +GC
Sbjct: 241 IVSFRGCCRVN--CNWYWSGWSRCTGC 265
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,458,747
Number of Sequences: 59808
Number of extensions: 420663
Number of successful extensions: 1336
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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