Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021894
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.4  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   9.5  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 213 QPYCVSKEAGHQTSPNHGVPDV 278
           QP  V+++      P HG P V
Sbjct: 259 QPVTVNRQLNSDVQPGHGSPPV 280


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 314 YHHHGHAEFGRQHVRY 267
           +HHH H     QH+ Y
Sbjct: 351 HHHHHHQTQSLQHLHY 366


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 326 GQGAFGNMCRGGRMFAP 376
           G G FG++CRG     P
Sbjct: 640 GGGEFGDVCRGKLKLPP 656


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 228 SKEAGHQTSPNHGVPDVLSP 287
           S + G +TSPN  V   +SP
Sbjct: 575 SNDEGGKTSPNSAVRKCMSP 594


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 209 EAALLREQGGWSPNQSESWGTGRAVAR 289
           EAA + +   ++ N S  WG G A+ +
Sbjct: 249 EAAKMAKAFTYTYNYSMYWGQGHAILK 275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,916
Number of Sequences: 438
Number of extensions: 3373
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)