Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021893
(656 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 101 7e-23
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 64 1e-11
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 60 3e-10
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 48 9e-07
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 47 3e-06
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 45 8e-06
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 45 8e-06
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 44 2e-05
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 43 3e-05
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 42 1e-04
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 41 2e-04
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 40 4e-04
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 40 4e-04
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 38 0.001
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 38 0.001
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 38 0.001
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 36 0.004
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 36 0.005
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 36 0.007
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 34 0.016
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 33 0.036
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 32 0.084
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 32 0.084
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 31 0.19
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 29 0.78
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 27 1.8
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 3.1
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 4.2
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 4.2
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 7.3
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 7.3
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 7.3
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 7.3
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 25 9.6
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 101 bits (243), Expect = 7e-23
Identities = 44/84 (52%), Positives = 58/84 (69%)
Frame = +3
Query: 258 PFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTM 437
PF K+FY H V RS EV EYR + E+ V G+ V P+ FEEA FP+YV + VK +
Sbjct: 81 PFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQL 140
Query: 438 GYKEPTPIQAQGWPIAMSGKNLVG 509
G++ PTPIQ Q WP+AMSG+++VG
Sbjct: 141 GFEAPTPIQQQAWPMAMSGRDMVG 164
Score = 78.2 bits (184), Expect = 1e-15
Identities = 38/48 (79%), Positives = 40/48 (83%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 654
S TGSGKTL+Y LPAIVHIN QP + GDGPI LVLAPTRELA QIQQ
Sbjct: 166 SATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQ 213
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 64.5 bits (150), Expect = 1e-11
Identities = 26/46 (56%), Positives = 38/46 (82%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 648
++TGSGKT+A++LP HI +Q P++ G+GPIA+++ PTRELA QI
Sbjct: 462 AKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQI 507
Score = 50.8 bits (116), Expect = 2e-07
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVK 431
+ F K+FY + SP EV+E R + + + G++ P+ + + +
Sbjct: 375 EDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVIN 434
Query: 432 TMGYKEPTPIQAQGWPIAMSGKNLVG 509
++GY++PT IQAQ P SG++++G
Sbjct: 435 SLGYEKPTSIQAQAIPAITSGRDVIG 460
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 60.1 bits (139), Expect = 3e-10
Identities = 29/50 (58%), Positives = 38/50 (76%), Gaps = 3/50 (6%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQIQ 651
++TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ
Sbjct: 293 AETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ 342
Score = 47.2 bits (107), Expect = 2e-06
Identities = 18/60 (30%), Positives = 37/60 (61%)
Frame = +3
Query: 330 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 48.4 bits (110), Expect = 9e-07
Identities = 25/48 (52%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPP--IRRGDGPIALVLAPTRELAQQI 648
+QTGSGKTLAY+LP + + P R G A+++APTREL QQI
Sbjct: 185 AQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQI 232
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 46.8 bits (106), Expect = 3e-06
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Frame = +3
Query: 321 EEYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 491
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA WP ++
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 492 GKNLVG 509
G+++VG
Sbjct: 202 GRDVVG 207
Score = 38.7 bits (86), Expect = 7e-04
Identities = 20/45 (44%), Positives = 31/45 (68%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 645
++TGSGKT+A+ +PA+ ++N + P LV++PTRELA Q
Sbjct: 209 AETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQ 251
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 45.2 bits (102), Expect = 8e-06
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQI 648
++TGSGKT AY++P + + Q I G AL+L PTRELAQQ+
Sbjct: 58 ARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQV 104
Score = 33.5 bits (73), Expect = 0.027
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +3
Query: 357 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+LV
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLV 55
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 45.2 bits (102), Expect = 8e-06
Identities = 24/44 (54%), Positives = 29/44 (65%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 648
TGSGKTLAY+LP + + G G AL++APTRELA QI
Sbjct: 47 TGSGKTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTRELATQI 88
Score = 34.3 bits (75), Expect = 0.016
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
F+ N +++ V G+K+ TP+QA P+ + K+LV
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLV 42
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 44.0 bits (99), Expect = 2e-05
Identities = 26/49 (53%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQ 654
+QTGSGKT A+ LP I + NN P A+VLAPTRELA QI +
Sbjct: 90 AQTGSGKTAAFALPVIQELWNNPSPF------FAVVLAPTRELAYQISE 132
Score = 34.3 bits (75), Expect = 0.016
Identities = 12/41 (29%), Positives = 26/41 (63%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
F+E D + + + +G+K PTPIQ + P+ ++ ++++G
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIG 88
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 43.2 bits (97), Expect = 3e-05
Identities = 24/49 (48%), Positives = 30/49 (61%)
Frame = +1
Query: 508 GSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 654
G++TGSGKT A+ LP I + P G AL+L PTRELA QI +
Sbjct: 50 GAKTGSGKTAAFALPIIEKWSKDP-----SGIFALILTPTRELAIQIDE 93
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 41.5 bits (93), Expect = 1e-04
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +3
Query: 345 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLM 210
Score = 31.5 bits (68), Expect = 0.11
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 13/61 (21%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRELAQQIQ 651
+QTGSGKT ++ P + + + P P+ + G P L+LAPTREL QI
Sbjct: 213 AQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIH 272
Query: 652 Q 654
+
Sbjct: 273 E 273
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 40.7 bits (91), Expect = 2e-04
Identities = 23/45 (51%), Positives = 32/45 (71%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 645
++TGSGKTLA+I+P I ++ + DG ALV++PTRELA Q
Sbjct: 83 AKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQ 126
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 39.5 bits (88), Expect = 4e-04
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 648
TGSGKT+AY+ P + + P G A+++APTREL +QI
Sbjct: 92 TGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTRELCEQI 131
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 39.5 bits (88), Expect = 4e-04
Identities = 25/50 (50%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--ALVLAPTRELAQQIQQ 654
+ TGSGKTLA+ +P + H +R D ALV+APTRELA QI Q
Sbjct: 166 ADTGSGKTLAFGIPILEHC-----LRNVDAKYVQALVVAPTRELAHQICQ 210
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 38.3 bits (85), Expect = 0.001
Identities = 22/48 (45%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQQI 648
++TGSGKTLA+++P I ++ P R G G ++++PTRELA QI
Sbjct: 133 AKTGSGKTLAFLIPTIEMLYALKFKP-RNGTG--VIIISPTRELALQI 177
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 37.9 bits (84), Expect = 0.001
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 648
++TG+GKTLA++L A + P +++L+PTRELA QI
Sbjct: 83 AKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQI 128
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 37.9 bits (84), Expect = 0.001
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 645
++TGSGKT A+++P I H+ + AL+L+P RELA Q
Sbjct: 113 ARTGSGKTAAFVIPMIEHLKS---TLANSNTRALILSPNRELALQ 154
Score = 31.1 bits (67), Expect = 0.15
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
F+ + + + G+K PTPIQ + P+ + G+++VG
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVG 111
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 36.3 bits (80), Expect = 0.004
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 645
TGSGKT A+I+P + + +P ++ L+L PTRELA Q
Sbjct: 305 TGSGKTAAFIVPILERLLYRP--KKVPTTRVLILCPTRELAMQ 345
Score = 35.1 bits (77), Expect = 0.009
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
F+ N + +G+ +G++ PT IQ + P+A+ GK++VG
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVG 301
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 35.9 bits (79), Expect = 0.005
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 648
SQ+G+GKT A+ L + ++ P P A+ LAP+RELA+QI
Sbjct: 160 SQSGTGKTAAFALTMLSRVDASVP-----KPQAICLAPSRELARQI 200
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 35.5 bits (78), Expect = 0.007
Identities = 20/48 (41%), Positives = 32/48 (66%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 654
+Q+G+GKT + + + I+ +++ AL+LAPTRELAQQIQ+
Sbjct: 63 AQSGTGKTATFSISVLQKIDTS--LKQCQ---ALILAPTRELAQQIQK 105
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 34.3 bits (75), Expect = 0.016
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Frame = +1
Query: 505 LGSQTGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQI 648
+ + TGSGKTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 178 VSAATGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 33.1 bits (72), Expect = 0.036
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
FE+ + G+ G++ P+PIQ + PIA+SG++++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDIL 85
Score = 32.3 bits (70), Expect = 0.063
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 654
++ G+GKT A+++P++ ++ + + L+L PTRELA Q Q
Sbjct: 88 AKNGTGKTAAFVIPSLEKVDTKKSKIQ-----TLILVPTRELALQTSQ 130
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 31.9 bits (69), Expect = 0.084
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 648
TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 31.9 bits (69), Expect = 0.084
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 648
TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 30.7 bits (66), Expect = 0.19
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = +3
Query: 321 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 500
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 501 LV 506
++
Sbjct: 61 VI 62
Score = 29.9 bits (64), Expect = 0.34
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQ 651
+Q+G+GKT + + + I+ +R AL+L+PTRELA QIQ
Sbjct: 65 AQSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAVQIQ 106
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 28.7 bits (61), Expect = 0.78
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = -3
Query: 240 PIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPV--TR 67
P S V PS F ++ S +S AT+AK + +S KF + V T
Sbjct: 143 PFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFLFEAKERLTSVVETE 201
Query: 66 HDYFSDLVEDVYLNYGFFLTQG 1
H+Y+++LV+ ++ F +QG
Sbjct: 202 HEYYTELVKVKEASWPLFNSQG 223
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 220 NMRRPDW-DSVSLNLSTKTFMIHILQFSKDHHMKSKSIEI 336
+++ P W +++LNL +K+ + + +SKD K I +
Sbjct: 1152 SLKTPSWLPNLTLNLESKSTTLRTIYYSKDFDEKGNQITV 1191
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 449 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISIL 324
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +3
Query: 309 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 440
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 4.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 309 PYEVEEYRNKHEVTVS 356
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 633 LSGRRQDQSNRTITSPNRRLVI 568
LSG+R D S RT+ SP+ L I
Sbjct: 350 LSGKRVDFSGRTVISPDPNLRI 371
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -3
Query: 84 IIPVTR-HDYFSDLVEDVYLNYGFFLTQ 4
++PVT+ + D++ED++ NY F +T+
Sbjct: 221 VVPVTQVKNAPDDVLEDLFKNYDFIVTE 248
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 7.3
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 642
TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 543 TGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -3
Query: 438 PLSLHLVAHNQENL--LLQSIE 379
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 25.0 bits (52), Expect = 9.6
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 249 FTQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQ 383
FT+ FYDP P LK + +E+ + V +H P+Q
Sbjct: 118 FTKGGYGGFYDPRPGCLKFTTHEINVSYTDTSIPV----IHIPVQ 158
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,618,180
Number of Sequences: 5004
Number of extensions: 56188
Number of successful extensions: 214
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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