Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021893
(656 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 103 1e-22
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 95 5e-20
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 95 5e-20
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 75 3e-14
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 73 2e-13
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 73 2e-13
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 73 2e-13
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 72 3e-13
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 72 3e-13
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 65 4e-11
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 63 1e-10
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 58 4e-09
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 56 2e-08
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 50 2e-06
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 50 2e-06
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 46 2e-05
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 46 3e-05
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 45 5e-05
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 45 5e-05
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 44 7e-05
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 44 7e-05
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 44 9e-05
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 44 1e-04
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 44 1e-04
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 43 2e-04
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 43 2e-04
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 42 3e-04
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 42 3e-04
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 42 4e-04
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 42 4e-04
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 42 4e-04
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 42 5e-04
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 41 8e-04
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 40 0.001
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 40 0.001
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 40 0.001
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 40 0.001
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 40 0.002
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 40 0.002
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 40 0.002
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 39 0.003
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 39 0.003
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 38 0.004
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 38 0.004
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 36 0.024
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 35 0.041
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 35 0.055
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 34 0.096
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 33 0.17
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 32 0.29
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 32 0.39
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 32 0.39
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 31 0.51
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 31 0.51
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 31 0.51
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 31 0.67
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 31 0.67
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 31 0.67
At2g25460.1 68415.m03049 expressed protein 30 1.2
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 29 2.7
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 29 2.7
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 29 2.7
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 28 4.8
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 28 4.8
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 28 4.8
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 28 4.8
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 28 6.3
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 28 6.3
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 28 6.3
At5g64440.1 68418.m08095 amidase family protein low similarity t... 27 8.3
At5g06340.1 68418.m00710 diadenosine 5',5'''-P1,P4-tetraphosphat... 27 8.3
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 103 bits (246), Expect = 1e-22
Identities = 43/84 (51%), Positives = 57/84 (67%)
Frame = +3
Query: 258 PFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTM 437
PF KNFY P V + EVEEYR E+TV G ++ P++ F + FPDYV + VK
Sbjct: 58 PFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVKKA 117
Query: 438 GYKEPTPIQAQGWPIAMSGKNLVG 509
G+ EPTPIQ+QGWP+AM G++L+G
Sbjct: 118 GFTEPTPIQSQGWPMAMKGRDLIG 141
Score = 80.2 bits (189), Expect = 1e-15
Identities = 36/48 (75%), Positives = 42/48 (87%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 654
++TGSGKTL+Y+LPAIVH+N QP + GDGPI LVLAPTRELA QIQQ
Sbjct: 143 AETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQ 190
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 94.7 bits (225), Expect = 5e-20
Identities = 39/93 (41%), Positives = 61/93 (65%)
Frame = +3
Query: 231 PRLGFCFTQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 410
P+ F F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 411 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
+ + + +G+ EPTPIQAQGWP+A+ G++L+G
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIG 207
Score = 74.1 bits (174), Expect = 7e-14
Identities = 32/48 (66%), Positives = 42/48 (87%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 654
++TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+
Sbjct: 209 AETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQE 256
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 94.7 bits (225), Expect = 5e-20
Identities = 39/93 (41%), Positives = 61/93 (65%)
Frame = +3
Query: 231 PRLGFCFTQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 410
P+ F F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 411 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
+ + + +G+ EPTPIQAQGWP+A+ G++L+G
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIG 207
Score = 74.1 bits (174), Expect = 7e-14
Identities = 32/48 (66%), Positives = 42/48 (87%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 654
++TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+
Sbjct: 209 AETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQE 256
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 75.4 bits (177), Expect = 3e-14
Identities = 29/85 (34%), Positives = 51/85 (60%)
Frame = +3
Query: 255 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 434
+P NK+FY+ ++ + E +YR + + VSG +VH P++ FE+ F + +K
Sbjct: 186 EPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKK 245
Query: 435 MGYKEPTPIQAQGWPIAMSGKNLVG 509
Y++PT IQ Q PI +SG++++G
Sbjct: 246 QAYEKPTAIQCQALPIVLSGRDVIG 270
Score = 66.1 bits (154), Expect = 2e-11
Identities = 28/46 (60%), Positives = 38/46 (82%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 648
++TGSGKT A++LP IVHI +QP ++R +GPI ++ APTRELA QI
Sbjct: 272 AKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQI 317
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 72.9 bits (171), Expect = 2e-13
Identities = 33/75 (44%), Positives = 45/75 (60%)
Frame = +3
Query: 282 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 461
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 462 QAQGWPIAMSGKNLV 506
QAQ WPIAM G+++V
Sbjct: 185 QAQSWPIAMQGRDIV 199
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/48 (52%), Positives = 33/48 (68%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 654
++TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+
Sbjct: 202 AKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQE 248
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 72.9 bits (171), Expect = 2e-13
Identities = 33/75 (44%), Positives = 45/75 (60%)
Frame = +3
Query: 282 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 461
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 462 QAQGWPIAMSGKNLV 506
QAQ WPIAM G+++V
Sbjct: 185 QAQSWPIAMQGRDIV 199
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/48 (52%), Positives = 33/48 (68%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 654
++TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+
Sbjct: 202 AKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQE 248
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 72.9 bits (171), Expect = 2e-13
Identities = 33/75 (44%), Positives = 45/75 (60%)
Frame = +3
Query: 282 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 461
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 462 QAQGWPIAMSGKNLV 506
QAQ WPIAM G+++V
Sbjct: 185 QAQSWPIAMQGRDIV 199
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/48 (52%), Positives = 33/48 (68%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 654
++TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+
Sbjct: 202 AKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQE 248
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 72.1 bits (169), Expect = 3e-13
Identities = 30/46 (65%), Positives = 38/46 (82%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 648
++TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI
Sbjct: 440 AKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQI 485
Score = 66.9 bits (156), Expect = 1e-11
Identities = 30/85 (35%), Positives = 48/85 (56%)
Frame = +3
Query: 255 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 434
+PF KNFY + + + V YR + E+ V G +V PIQ++ + + +K
Sbjct: 354 EPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKK 413
Query: 435 MGYKEPTPIQAQGWPIAMSGKNLVG 509
+ Y++P PIQAQ PI MSG++ +G
Sbjct: 414 LNYEKPMPIQAQALPIIMSGRDCIG 438
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 72.1 bits (169), Expect = 3e-13
Identities = 30/46 (65%), Positives = 38/46 (82%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 648
++TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI
Sbjct: 573 AKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQI 618
Score = 66.5 bits (155), Expect = 1e-11
Identities = 29/85 (34%), Positives = 48/85 (56%)
Frame = +3
Query: 255 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 434
+PF KNFY + + + EV YR + E+ V G +V PI+++ + + +K
Sbjct: 487 EPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKK 546
Query: 435 MGYKEPTPIQAQGWPIAMSGKNLVG 509
+ Y++P PIQ Q PI MSG++ +G
Sbjct: 547 LNYEKPMPIQTQALPIIMSGRDCIG 571
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 64.9 bits (151), Expect = 4e-11
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Frame = +3
Query: 264 NKNFYDPH----PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 431
NK+ PH P V SP E+ YR +HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 432 TMGYKEPTPIQAQGWPIAMSGKNLV 506
+ G+ PTPIQAQ WPIA+ +++V
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIV 476
Score = 50.8 bits (116), Expect = 8e-07
Identities = 25/47 (53%), Positives = 34/47 (72%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQ 651
++TGSGKTL Y++PA + + + R +GP L+LAPTRELA QIQ
Sbjct: 479 AKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQIQ 524
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 63.3 bits (147), Expect = 1e-10
Identities = 29/90 (32%), Positives = 53/90 (58%)
Frame = +3
Query: 240 GFCFTQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQ 419
G +T+P + ++ P V K S +++ R + +TV+G ++ PI+ F + FP +
Sbjct: 51 GITYTEPLS-TWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLL 109
Query: 420 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
+ +K G PTPIQ QG P+ +SG++++G
Sbjct: 110 RMLKDKGIMHPTPIQVQGLPVVLSGRDMIG 139
Score = 51.2 bits (117), Expect = 6e-07
Identities = 25/46 (54%), Positives = 33/46 (71%), Gaps = 3/46 (6%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQ 645
TGSGKTL ++LP I+ + PI G+GPIALV+ P+RELA+Q
Sbjct: 143 TGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQ 188
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 58.4 bits (135), Expect = 4e-09
Identities = 26/51 (50%), Positives = 39/51 (76%), Gaps = 3/51 (5%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIQQ 654
++TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQI++
Sbjct: 357 AETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEE 407
Score = 41.5 bits (93), Expect = 5e-04
Identities = 15/61 (24%), Positives = 34/61 (55%)
Frame = +3
Query: 327 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
+R ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Query: 507 G 509
G
Sbjct: 355 G 355
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 56.4 bits (130), Expect = 2e-08
Identities = 27/90 (30%), Positives = 50/90 (55%)
Frame = +3
Query: 240 GFCFTQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQ 419
G +T+P + P + K S + + R + + V+G ++ PI+ F++ FP V
Sbjct: 100 GITYTEPLLTG-WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVL 158
Query: 420 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
+K G +PTPIQ QG P+ ++G++++G
Sbjct: 159 DTLKEKGIVQPTPIQVQGLPVILAGRDMIG 188
Score = 48.0 bits (109), Expect = 5e-06
Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 3/46 (6%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQ 645
TGSGKTL ++LP I+ + PI G+GPI L++ P+RELA+Q
Sbjct: 192 TGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQ 237
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/47 (53%), Positives = 32/47 (68%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQ 651
++TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ
Sbjct: 273 AKTGSGKTLGYLIPGFMHLQRIHNDSRM-GPTILVLSPTRELATQIQ 318
Score = 37.5 bits (83), Expect = 0.008
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +3
Query: 426 VKTMGYKEPTPIQAQGWPIAMSGKNLV 506
V + G+ P+PIQAQ WPIAM +++V
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIV 270
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 321 EEYRNKHEVTVSGVEVHNPIQYFEEANFPD 410
E Y KHE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Frame = +1
Query: 505 LGSQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQ 654
+ + TG+GKT+AY+ P I H+ + P + R G ALV+ PTREL Q+ +
Sbjct: 72 VNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYE 122
Score = 31.1 bits (67), Expect = 0.67
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +3
Query: 435 MGYKEPTPIQAQGWPIAMSGKN-LVG*PNG 521
MG++ PT +QAQ P+ +SG++ LV P G
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTG 77
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQ 654
++TG+GKTLA+ +P I I RG P+ LVLAPTRELA+Q+++
Sbjct: 148 ARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEK 196
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 45.6 bits (103), Expect = 3e-05
Identities = 26/50 (52%), Positives = 33/50 (66%), Gaps = 4/50 (8%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQI 648
++TGSGKTLA+ +PAI+H+ I G P LVL+PTRELA QI
Sbjct: 158 AKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQI 207
Score = 44.4 bits (100), Expect = 7e-05
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Frame = +3
Query: 315 EVEEYRNKHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 488
E E + K VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 489 SGKNLVG 509
G++L+G
Sbjct: 150 DGRDLIG 156
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 44.8 bits (101), Expect = 5e-05
Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 645
++TG+GKT+A++LPAI + PP R I LV+ PTRELA Q
Sbjct: 426 AKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQ 473
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 44.8 bits (101), Expect = 5e-05
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 5/53 (9%)
Frame = +1
Query: 505 LGSQTGSGKTLAYILPAIVHINNQPPIRRGD-----GPIALVLAPTRELAQQI 648
LGS TGSGKTLAY+LP IV + + G P +VL PTREL++Q+
Sbjct: 154 LGSHTGSGKTLAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQV 205
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 44.4 bits (100), Expect = 7e-05
Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINN-QPPIRRGDGPIALVLAPTRELAQQIQQ 654
++TG+GKTLA+ +P I I RG P LVLAPTRELA+Q+++
Sbjct: 160 ARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEK 208
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 44.4 bits (100), Expect = 7e-05
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQI 648
+QTGSGKT A+ P I I ++R G P+A++L+PTRELA QI
Sbjct: 203 AQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQI 253
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +3
Query: 258 PFNKNFYDPHPTVLKRSPYEVE-EYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 434
PF + +P P ++ + + + SG V P+ F E + + + ++
Sbjct: 117 PFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNIRR 176
Query: 435 MGYKEPTPIQAQGWPIAMSGKNLV 506
Y +PTP+Q PI + G++L+
Sbjct: 177 CKYVKPTPVQRHAIPILLEGRDLM 200
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 44.0 bits (99), Expect = 9e-05
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRR-----GDGPIALVLAPTRELAQQI 648
++TG GKTLA++LP + + N P + G P LVL PTRELA+Q+
Sbjct: 140 ARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQV 190
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +3
Query: 306 SPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIA 485
S E ++ K ++ V VEV NP + +++ +K G + PIQA + +
Sbjct: 72 SSSEKKKSSKKVKLGVEDVEVDNP-NAVSKFRISAPLREKLKANGIEALFPIQASTFDMV 130
Query: 486 MSGKNLVG 509
+ G +LVG
Sbjct: 131 LDGADLVG 138
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/52 (42%), Positives = 32/52 (61%)
Frame = +3
Query: 348 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 503
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDL 207
Score = 38.7 bits (86), Expect = 0.003
Identities = 26/58 (44%), Positives = 32/58 (55%)
Frame = +1
Query: 475 GR*LCLERI*LGSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 648
GR LC I TGSGKT A+ LP + + +P +R L+L PTRELA QI
Sbjct: 204 GRDLCASAI-----TGSGKTAAFALPTLERLLFRP--KRVFATRVLILTPTRELAVQI 254
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Frame = +3
Query: 330 RNKHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 497
R ++ + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Score = 36.7 bits (81), Expect = 0.014
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 645
TGSGKT A+I P ++ + DG A++L+P RELA Q
Sbjct: 187 TGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPTRELAQQI 648
++TGSGKTLAY+LP + + + + ++ P A +L P+REL QQ+
Sbjct: 90 AKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
Score = 33.9 bits (74), Expect = 0.096
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = +3
Query: 315 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 494
EVEE RN E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 495 KNLV 506
K++V
Sbjct: 84 KDVV 87
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQI 648
+QTGSGKT A+ P I I I R G P+A++L+PTRELA QI
Sbjct: 190 AQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQI 240
Score = 37.9 bits (84), Expect = 0.006
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = +3
Query: 252 TQPF-NKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 428
T PF N DP + + E Y + + SG V P+ F E + + + +
Sbjct: 103 TNPFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNI 161
Query: 429 KTMGYKEPTPIQAQGWPIAMSGKNLV 506
+ Y +PTP+Q PI +G++L+
Sbjct: 162 QRCKYVKPTPVQRNAIPILAAGRDLM 187
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/48 (47%), Positives = 33/48 (68%), Gaps = 3/48 (6%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGD--GPI-ALVLAPTRELAQQ 645
++TG+GKT+A++LP+I + PP + PI ALV+ PTRELA Q
Sbjct: 98 AKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQ 145
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +3
Query: 306 SPYEVEEYRNKHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 479
S ++ + R K ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 480 IAMSGKNLV 506
A++GK+L+
Sbjct: 143 AALTGKSLL 151
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQ 651
+ TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++
Sbjct: 154 ADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVE 203
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 645
++TG+GKT+A++LP+I + PP R + I LV+ PTRELA Q
Sbjct: 124 AKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 41.9 bits (94), Expect = 4e-04
Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQI 648
+QTGSGKT A+ P I I + R G P A++L+PTRELA QI
Sbjct: 195 AQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQI 245
Score = 34.7 bits (76), Expect = 0.055
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 345 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLM 192
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 41.9 bits (94), Expect = 4e-04
Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQI 648
+QTGSGKT A+ P I I + R G P A++L+PTRELA QI
Sbjct: 195 AQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQI 245
Score = 34.7 bits (76), Expect = 0.055
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 345 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLM 192
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQ 651
+ TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++
Sbjct: 17 ADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVE 66
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 40.7 bits (91), Expect = 8e-04
Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 5/53 (9%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQP----PIRR-GDGPIALVLAPTRELAQQIQQ 654
++TG+GKTLA+ +P I + + RR G P LVLAPTRELA+Q+++
Sbjct: 146 AKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEK 198
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/54 (38%), Positives = 34/54 (62%)
Frame = +1
Query: 484 LCLERI*LGSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 645
LC I ++TGSGKTLA+++P + ++ + DG ++++PTRELA Q
Sbjct: 106 LCGRDILGAARTGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPTRELAAQ 158
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/45 (44%), Positives = 32/45 (71%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 645
++TGSGKT A+++P + + P +G G AL+L+PTR+LA+Q
Sbjct: 72 ARTGSGKTAAFLIPMLEKLKQHVP--QG-GVRALILSPTRDLAEQ 113
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
FE N V +K GYK PTPIQ + P+ +SG ++V
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVV 69
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 4/50 (8%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQI 648
++TG+GK++A++LPAI + N+ + + AL+L PTRELA QI
Sbjct: 372 AKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQI 421
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/48 (50%), Positives = 31/48 (64%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 654
+QTGSGKT A+ LP I+H + P G ALV+ PTRELA Q+ +
Sbjct: 102 AQTGSGKTAAFALP-ILHRLAEDPY----GVFALVVTPTRELAFQLAE 144
Score = 30.7 bits (66), Expect = 0.89
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
FE ++ + K +G ++PTP+Q P ++G++++G
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLG 100
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Frame = +1
Query: 505 LGSQTGSGKTLAYILPAIVHINN---QPPIRRGDG-PIALVLAPTRELAQQI 648
+ Q+GSGKTLAY++P I + Q + G P +VL PT ELA Q+
Sbjct: 416 IADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQV 467
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Frame = +1
Query: 484 LCLER-I*LGSQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQ 651
LC + + + + TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI
Sbjct: 50 LCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIH 107
Query: 652 Q 654
+
Sbjct: 108 K 108
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Frame = +1
Query: 484 LCLER-I*LGSQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQ 651
LC + + + + TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI
Sbjct: 51 LCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIH 108
Query: 652 Q 654
+
Sbjct: 109 K 109
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/45 (46%), Positives = 30/45 (66%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 645
++TGSGKTLA+++PA V + + +G LV+ PTRELA Q
Sbjct: 198 ARTGSGKTLAFLIPA-VELLYRVKFTPRNGTGVLVICPTRELAIQ 241
Score = 34.3 bits (75), Expect = 0.072
Identities = 21/85 (24%), Positives = 38/85 (44%)
Frame = +3
Query: 255 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 434
+P K T K EVE+ + ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 435 MGYKEPTPIQAQGWPIAMSGKNLVG 509
MG+ T IQA+ P M G++++G
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVLG 196
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 38.7 bits (86), Expect = 0.003
Identities = 24/49 (48%), Positives = 32/49 (65%)
Frame = +1
Query: 505 LGSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQ 651
+ S TGSGKTL+Y LP IV + P+R ALV+ PTR+LA Q++
Sbjct: 67 VNSPTGSGKTLSYALP-IVQLLASRPVR---CLRALVVLPTRDLALQVK 111
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 38.3 bits (85), Expect = 0.004
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAI-VHINNQPPIRRGDGPIALVLAPTRELAQQ 645
++TGSGKTLA+++PA+ + + R G G +V+ PTRELA Q
Sbjct: 133 ARTGSGKTLAFLIPAVELLFKERFSPRNGTG--VIVICPTRELAIQ 176
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQI 648
++TG+GK++A++LPAI + N+ + + L+L PTRELA QI
Sbjct: 419 AKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQI 468
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 35.9 bits (79), Expect = 0.024
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +3
Query: 363 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++G
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIG 51
Score = 35.1 bits (77), Expect = 0.041
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 7/55 (12%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHI-----NNQPPIRRGDGP--IALVLAPTRELAQQIQQ 654
+QTGSGKT A+ +P + + +++P R P A VL+PTRELA QI +
Sbjct: 53 AQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAE 107
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 35.1 bits (77), Expect = 0.041
Identities = 21/48 (43%), Positives = 27/48 (56%)
Frame = +1
Query: 505 LGSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 648
L +QTGSGKTL Y+L IN Q A+++ PTREL Q+
Sbjct: 118 LHAQTGSGKTLTYLLLIFSLINPQ-----RSSVQAVIVVPTRELGMQV 160
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 34.7 bits (76), Expect = 0.055
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLAPTRELAQQI 648
TGSGKTLA+++P + + PP + + ++++PTREL+ QI
Sbjct: 62 TGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIISPTRELSTQI 106
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 33.9 bits (74), Expect = 0.096
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDGP--------IALVLAPTRELAQQI 648
S TGSGKTLAY+LP + I R A+++AP+REL QI
Sbjct: 154 SYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQI 207
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
FEE PD + ++ G+ PT +Q+ P + G + V
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAV 151
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
PI+ F++ D V +GV GYK+P+ IQ + + G++++
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVI 63
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 32.3 bits (70), Expect = 0.29
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 645
+ GSGKT ++L + ++ P +R P AL + PTRELA Q
Sbjct: 138 AHNGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQ 177
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 31.9 bits (69), Expect = 0.39
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
FE+ + G+ G++ P+PIQ + PIA++G++++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDIL 172
Score = 31.5 bits (68), Expect = 0.51
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 654
++ G+GKT A+ +P + I+ + + A+++ PTRELA Q Q
Sbjct: 175 AKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQ 217
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 31.9 bits (69), Expect = 0.39
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
FE+ + G+ G++ P+PIQ + PIA++G++++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDIL 172
Score = 31.5 bits (68), Expect = 0.51
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 654
++ G+GKT A+ +P + I+ + + A+++ PTRELA Q Q
Sbjct: 175 AKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQ 217
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 31.5 bits (68), Expect = 0.51
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
FE+ + +G+ G+++P+PIQ + PIA++G +++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDIL 165
Score = 30.7 bits (66), Expect = 0.89
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 654
++ G+GKT A+ +P + I+ + + A++L PTRELA Q Q
Sbjct: 168 AKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQ 210
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 31.5 bits (68), Expect = 0.51
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
FE+ + +G+ G+++P+PIQ + PIA++G +++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDIL 165
Score = 30.7 bits (66), Expect = 0.89
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 654
++ G+GKT A+ +P + I+ + + A++L PTRELA Q Q
Sbjct: 168 AKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQ 210
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 31.5 bits (68), Expect = 0.51
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
FE+ + +G+ G+++P+PIQ + PIA++G +++
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDIL 195
Score = 31.1 bits (67), Expect = 0.67
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 654
++ G+GKT A+ +P + I+ + + + A++L PTRELA Q Q
Sbjct: 198 AKNGTGKTGAFCIPTLEKIDPENNVIQ-----AVILVPTRELALQTSQ 240
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 31.1 bits (67), Expect = 0.67
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +1
Query: 607 ALVLAPTRELAQQIQQ 654
ALVLAPTRELAQQI++
Sbjct: 110 ALVLAPTRELAQQIEK 125
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 31.1 bits (67), Expect = 0.67
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +1
Query: 607 ALVLAPTRELAQQIQQ 654
ALVLAPTRELAQQI++
Sbjct: 112 ALVLAPTRELAQQIEK 127
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 31.1 bits (67), Expect = 0.67
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +1
Query: 607 ALVLAPTRELAQQIQQ 654
ALVLAPTRELAQQI++
Sbjct: 110 ALVLAPTRELAQQIEK 125
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -2
Query: 196 SHQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGYY 80
+H S + + + + + E + R+CC++ WN F+ +Y
Sbjct: 63 NHTSSKPIALGSNHVEWEEEFERVCCIVGPWNLSFNVFY 101
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 648
+++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 90 AKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 648
+++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 7 AKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 47
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 648
+++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 90 AKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 28.3 bits (60), Expect = 4.8
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 15/63 (23%)
Frame = +1
Query: 511 SQTGSGKTLAYILPAIVHI--------------NNQPPIRRGDGPI-ALVLAPTRELAQQ 645
++TGSGKTLA+ LP + + + DG + AL++ PTRELA Q
Sbjct: 235 AETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQ 294
Query: 646 IQQ 654
+ +
Sbjct: 295 VTE 297
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 647 ICCANSLVGAKTKAIGPSPLRI 582
ICC N L G T+ + P PL++
Sbjct: 79 ICCGNDLSGDYTQVLAPEPLQM 100
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 267 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 422
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 161 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 211
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 267 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 422
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 237 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 287
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 276 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 452
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 453 TPIQAQGWPIAMS 491
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 276 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 452
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 453 TPIQAQGWPIAMS 491
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 276 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 452
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 453 TPIQAQGWPIAMS 491
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At5g64440.1 68418.m08095 amidase family protein low similarity to
enantiomerase-selective amidase [Rhodococcus sp.]
GI:152052; contains Pfam profile PF01425: Amidase
Length = 607
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +2
Query: 77 GIIAVETVVPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKNSLEGRT 223
G VE VVP LEE + +I +G T++ EA K S + RT
Sbjct: 423 GCKVVEIVVPELEEMRAAHVISIGSPTLSSLTPYCEAGKNSKLSYDTRT 471
>At5g06340.1 68418.m00710 diadenosine 5',5'''-P1,P4-tetraphosphate
hydrolase, putative similar to diadenosine
5',5'''-P1,P4-tetraphosphate hydrolase from [Lupinus
angustifolius] GI:1888557, [Hordeum vulgare subsp.
vulgare] GI:2564253; contains Pfam profile PF00293:
NUDIX domain
Length = 227
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +3
Query: 426 VKTMGYKEPTPIQAQGWPIAMSGKNLVG*PNGFRQNVGLHLASNC 560
+K P P+ ++ + + P G+R+NVG+ L S C
Sbjct: 30 LKQFSVSSPKPLVVLSVALSSPARTVESPPVGYRKNVGICLVSPC 74
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,520,634
Number of Sequences: 28952
Number of extensions: 286674
Number of successful extensions: 924
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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