Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021892
         (670 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    25   0.74 
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   4.0  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   4.0  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   6.9  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   6.9  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   9.1  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   9.1  

>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 24.6 bits (51), Expect = 0.74
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 535 GICRDVRPDLHEFLEFTLHSLQPADVGPRHVGNFH 431
           GI R+ +PD+  FL F  H   P D+   +  N H
Sbjct: 482 GILRE-KPDVKIFLPFRFHIYTPEDLFAPNTYNRH 515


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
 Frame = -3

Query: 431 PLSHVTPTETISSLRTGSYPWRQPEN*EPLRQSDRPRGQ*DP-SSHESAARLPPSTETRD 255
           P S  TPT   +   + S P    +   P  QS RP G   P  S+ S+    PS     
Sbjct: 215 PRSVATPTGIPTPSTSASPPTVNIKKESPQMQSYRPTGNITPHGSNTSSLITTPSPSASP 274

Query: 254 SAH 246
            A+
Sbjct: 275 LAY 277


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 59  HHDHVGRLLHAIH 21
           HH H G  +HA H
Sbjct: 322 HHHHAGHHIHAQH 334


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = -3

Query: 596 LPQPGGP*KRTPREGCMPNFRNLSGCST 513
           LP PG   + TP      N      CST
Sbjct: 409 LPSPGSDQRSTPSPRVYGNVNENQDCST 436


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 469 PADVGPRHVGNFHHCLT 419
           P  VGPR  G+ + CL+
Sbjct: 288 PGFVGPRCEGDINECLS 304


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +2

Query: 50  DRDGGHEPAELHRPGAA 100
           D +G H P  LH  G A
Sbjct: 41  DEEGYHTPESLHYEGRA 57


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 2    FTVIDAYGWHEEVVPRDRDGGHEPAE 79
            FT+  A  +H  +V  +  G  EP+E
Sbjct: 959  FTLRPATTYHIRIVAENEIGSSEPSE 984


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,640
Number of Sequences: 336
Number of extensions: 2886
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)