Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021892
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   2.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   2.6  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.0  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 323 EDDQIDAEVLNSLAVSMDNFRYAMTKSSPSALRETVVEVPNVTWTDIG 466
           +DD ID + +NSL +S   +   +T      ++E+ VEV  ++W   G
Sbjct: 223 DDDSIDFDRMNSLGLS---WLDQLTNLGFLGMKES-VEVDQLSWLGSG 266


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 323 EDDQIDAEVLNSLAVSMDNFRYAMTKSSPSALRETVVEVPNVTWTDIG 466
           +DD ID + +NSL +S   +   +T      ++E+ VEV  ++W   G
Sbjct: 261 DDDSIDFDRMNSLGLS---WLDQLTNLGFLGMKES-VEVDQLSWLGSG 304


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 515 TGSARVLGVHASLPPARRCRSTSRW 441
           T + +  G++ASLPP    ++   W
Sbjct: 283 TMATQTSGINASLPPVSYTKAIDIW 307


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 515 TGSARVLGVHASLPPARRCRSTSRW 441
           T + +  G++ASLPP    ++   W
Sbjct: 283 TMATQTSGINASLPPVSYTKAIDIW 307


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = -3

Query: 464 RCRSTSRWELPPLSHVTPTETISSLRTGSYPW 369
           R ++T +    P +H    ++    R+GS+ W
Sbjct: 676 RIKTTEKLSTDPNTHFQVNQSHGIKRSGSHSW 707


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,567
Number of Sequences: 438
Number of extensions: 3520
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)