Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021890
(559 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 39 6e-04
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 31 0.087
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 30 0.20
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 27 1.9
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 27 2.5
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom... 27 2.5
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 26 3.3
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 26 4.3
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 25 5.7
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 25 7.5
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb... 25 7.5
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 25 7.5
SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomy... 25 7.5
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 25 7.5
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom... 25 10.0
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2... 25 10.0
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 25 10.0
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 38.7 bits (86), Expect = 6e-04
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Frame = +1
Query: 259 TIIVASASQDTYIRLWRIQKVKAQPESKLIKVEEKVFH---AYDNLWSVKL----EAVLA 417
T +AS SQD YIRLW I ++ E + E V L + L +A+L
Sbjct: 206 TATLASGSQDRYIRLWNISLWGSEDEKVSEEFFESVLSNKPVRFTLGKIDLKIVFDALLM 265
Query: 418 GHEA*VYGVQWHP 456
GHE V V WHP
Sbjct: 266 GHEDWVMSVDWHP 278
Score = 24.6 bits (51), Expect = 10.0
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +2
Query: 203 LVGHEDWVRGLD 238
L+GHEDWV +D
Sbjct: 264 LMGHEDWVMSVD 275
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 31.5 bits (68), Expect = 0.087
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +2
Query: 2 STDSTIKVWE-RIEGTVTLKQSISLHSGLCLTLHAQILPCANKPLLLCALDDHKIHIF-V 175
S D T+++ + R+ + I HS ++A + N LL A D + ++ +
Sbjct: 255 SDDCTLQIHDTRLNPEEEAPKVIQAHSK---AINAVAINPFNDYLLATASADKTVALWDL 311
Query: 176 GEDYHRAHTLVGHEDWVRGLD 238
Y R HTL GHED V GL+
Sbjct: 312 RNPYQRLHTLEGHEDEVYGLE 332
Score = 26.2 bits (55), Expect = 3.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 412 LAGHEA*VYGVQWHPY 459
L GHE VYG++W P+
Sbjct: 321 LEGHEDEVYGLEWSPH 336
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 30.3 bits (65), Expect = 0.20
Identities = 28/75 (37%), Positives = 35/75 (46%)
Frame = +2
Query: 2 STDSTIKVWERIEGTVTLKQSISLHSGLCLTLHAQILPCANKPLLLCALDDHKIHIFVGE 181
S DSTIK+W +E T T + S H G Q L A+ L C+LD I + E
Sbjct: 411 SDDSTIKIWS-LE-TNTCLHTFSAHIG-----PVQSLALADSRLFSCSLDG-TIKQWDIE 462
Query: 182 DYHRAHTLVGHEDWV 226
HTL GH + V
Sbjct: 463 KKKCVHTLFGHIEGV 477
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 27.1 bits (57), Expect = 1.9
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +1
Query: 256 DTIIVASASQDTYIRLWRIQ-KVKAQPESKLIK 351
D+ ++A Q++YIRLW I+ K+ P+S ++
Sbjct: 335 DSTMIACGFQESYIRLWSIKADKKSLPKSTSVE 367
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 26.6 bits (56), Expect = 2.5
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +2
Query: 125 KPLLLCALDDHKIHIFVGEDYHRAHTLVGHEDWVR 229
+PL + DD+K++++ + +L GH D+VR
Sbjct: 65 QPLFVSGGDDYKVNVWNYKSRKLLFSLCGHMDYVR 99
Score = 24.6 bits (51), Expect = 10.0
Identities = 16/72 (22%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Frame = +1
Query: 265 IVASASQDTYIRLWRIQKVKAQPESKL-IKVEEKVFHAYDNL-------WSVKLEAVLAG 420
++ SAS D +R+W I ++ + + + + +E+++ A++++ ++ VL G
Sbjct: 151 LIVSASLDQTVRVWDISGLRMKNAAPVSMSLEDQLAQAHNSISNDLFGSTDAIVKFVLEG 210
Query: 421 HEA*VYGVQWHP 456
H+ V +HP
Sbjct: 211 HDRGVNWCAFHP 222
>SPAC890.04c |||ribosome biogenesis protein Ytm1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 26.6 bits (56), Expect = 2.5
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Frame = +2
Query: 8 DSTIKVWERIEGTVTLKQSISLHSGLCLTLHAQILPCANKPLLLCALDDHKIHIF---VG 178
D TIK W+ I G + I+ LC+ + L++C I + G
Sbjct: 290 DHTIKTWDLITGQ-NVDSKITKAPLLCVEKLTDL------HLVICGSSARHIVVHDPRAG 342
Query: 179 EDYHRAHTLVGHEDWVRGL 235
D +HTL GH++ V GL
Sbjct: 343 SDKIVSHTLSGHKNLVSGL 361
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 26.2 bits (55), Expect = 3.3
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = +2
Query: 8 DSTIKVWERIEGT--VTLKQSISLHSGLCLT-LHAQILPCANKPLLLC-ALDDHKI 163
D TIK+W+ G +TL I+ GL ++ H + C ++ C L+ +K+
Sbjct: 184 DRTIKIWDLASGVLKLTLTGHIATVRGLAVSPRHPYLFSCGEDKMVKCWDLETNKV 239
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 25.8 bits (54), Expect = 4.3
Identities = 18/55 (32%), Positives = 33/55 (60%)
Frame = +1
Query: 256 DTIIVASASQDTYIRLWRIQKVKAQPESKLIKVEEKVFHAYDNLWSVKLEAVLAG 420
D+ ++ S+SQDT +++W ++ K + + L E++VF A D WS + V +G
Sbjct: 442 DSRLLVSSSQDTTLKVWDVRSKKMKFD--LPGHEDQVF-AVD--WSPDGQRVASG 491
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 25.4 bits (53), Expect = 5.7
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 256 DTIIVASASQDTYIRLW 306
D I+ASASQD I+LW
Sbjct: 476 DGRIIASASQDKTIKLW 492
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 218 LRVQPEYALCDSPHQRIYVFCG 153
+ ++PEY L D +YV CG
Sbjct: 114 MEIKPEYLLPDRHINEVYVSCG 135
>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 423 MTGKHCLKFHRPKI 382
+TG H LK HRP I
Sbjct: 3 LTGAHMLKIHRPSI 16
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 25.0 bits (52), Expect = 7.5
Identities = 18/69 (26%), Positives = 29/69 (42%)
Frame = +2
Query: 8 DSTIKVWERIEGTVTLKQSISLHSGLCLTLHAQILPCANKPLLLCALDDHKIHIFVGEDY 187
D T+KVW G+ ++ H + P +KP L+ A DD+ I ++ +
Sbjct: 163 DGTVKVWSF--GSSVANFTLQAHDRG--VNYVNYYPAGDKPYLITAGDDNLIKVWDYQTK 218
Query: 188 HRAHTLVGH 214
L GH
Sbjct: 219 ACVRILEGH 227
>SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 333
Score = 25.0 bits (52), Expect = 7.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 262 IIVASASQDTYIRLWRIQKVKAQPESKLIKVEEK 363
I ++SAS DT+ + R K + QP K K EK
Sbjct: 253 IALSSASADTFKKGSRSTKSRPQPNPKRQKKNEK 286
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 25.0 bits (52), Expect = 7.5
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Frame = +2
Query: 2 STDSTIKVWERIEGTVTLKQSISLHSGLC---LTLHAQ-ILPCANKP---LLLCALDDHK 160
S D+TIK+WE ++ + S+ G+C T H IL P ++ D
Sbjct: 477 SLDNTIKLWE-LQCVSNVAPSMYKEGGICKQTFTGHKDFILSVTVSPDGKWIISGSKDRT 535
Query: 161 IHIFVGEDYHRAHTLVGHEDWV 226
I + + H TL GH + V
Sbjct: 536 IQFWSPDSPHSQLTLQGHNNSV 557
>SPBC3B9.09 |vps36||RBZ zinc finger protein
Vps36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 467
Score = 24.6 bits (51), Expect = 10.0
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +1
Query: 253 YDTIIVASASQDTYIRLWRIQKVKAQPESKLIKVEEKVFHAYDNL 387
YDT ++ A + +R+ I ++ E +L K + HA+ +L
Sbjct: 203 YDTKVLRKAILEKSLRMGGIHDLEQSHEMQLAKNGRTLVHAFQDL 247
>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 24.6 bits (51), Expect = 10.0
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +2
Query: 104 QILPCANKPLLLCALDDHKIHIFVGEDYHRAHTLV 208
+I+P + KP D H I +G + HR V
Sbjct: 373 EIMPLSEKPRAFLEKDIHPEIILIGRNLHRISPFV 407
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 24.6 bits (51), Expect = 10.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 382 NLWSVKLEAVLAGHEA*VYGVQWHP 456
+L ++K VL GHE V V WHP
Sbjct: 278 DLRAMKDVRVLRGHEKDVNCVTWHP 302
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,659,435
Number of Sequences: 5004
Number of extensions: 59427
Number of successful extensions: 229
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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