Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021890
(559 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1111 + 24377268-24377444,24377543-24377630,24378072-243781... 42 3e-04
02_04_0260 - 21350060-21350269,21350544-21350604,21350834-213509... 33 0.20
11_06_0627 + 25633537-25633884,25635246-25635869 32 0.36
09_01_0139 - 2074193-2077146,2077549-2078043,2078983-2079190 31 0.82
03_05_0887 - 28527602-28530555,28531296-28531790,28532377-28532584 31 0.82
03_05_0886 - 28516210-28519163,28519577-28520071,28520757-28520964 31 0.82
02_04_0389 - 22570374-22570718,22570807-22570815 31 0.82
02_01_0726 + 5440341-5440661,5441574-5441620,5442917-5442977,544... 30 1.1
02_05_1320 - 35693575-35694846 29 2.5
09_06_0121 + 20975132-20975755,20976834-20976977,20977333-209774... 29 3.3
02_01_0443 + 3204142-3204674,3205446-3206178 28 5.8
01_06_0884 + 32715963-32716284,32716837-32717567 28 5.8
04_01_0421 - 5565494-5565592,5565898-5565984,5567164-5567253,556... 27 7.7
03_05_1069 + 30118930-30120120 27 7.7
01_06_1609 + 38621264-38621386,38621521-38621578,38621778-386220... 27 7.7
>08_02_1111 +
24377268-24377444,24377543-24377630,24378072-24378157,
24378358-24378511,24378723-24378883,24378964-24379632,
24379860-24380058,24380188-24380405,24380578-24380755,
24380859-24381358
Length = 809
Score = 42.3 bits (95), Expect = 3e-04
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Frame = +2
Query: 2 STDSTIKVWERIE-----GT--VTLKQSISLHSGLCLTLHAQILPCANKPLLLCALD-DH 157
S+D T+ +W+ + G+ V+ SIS+ ++L +LP L+L DH
Sbjct: 151 SSDGTVVIWKMEDEPTSVGSCEVSCLHSISVGPKPMVSLSLAVLPGQGGHLILAMGGLDH 210
Query: 158 KIHIFVGED---YHRAHTLVGHEDWVRGLD 238
K+HI+ G+ + +A L GH DW+R LD
Sbjct: 211 KVHIYCGDQSGKFIKACQLKGHSDWIRSLD 240
Score = 40.7 bits (91), Expect = 8e-04
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Frame = +1
Query: 259 TIIVASASQDTYIRLWR-----IQKVKAQPESKLIKV----EEKVFHAYDNLWSVKLEAV 411
++ + S+SQD IR+W+ + P + I + E +F + + + V LE++
Sbjct: 253 SLFLVSSSQDRTIRIWKMNSDAVSSAHTTPRKEDIGIASYIEGPLFVSSNTHYQVSLESL 312
Query: 412 LAGHEA*VYGVQWHP 456
L GHE VY V+W P
Sbjct: 313 LVGHEDWVYSVEWQP 327
>02_04_0260 -
21350060-21350269,21350544-21350604,21350834-21350901,
21351274-21351483,21351684-21351724,21351923-21351972,
21352084-21352172,21352265-21352339,21352539-21352656,
21352689-21352771,21352854-21352970,21353857-21354074,
21354184-21354241,21354356-21354508
Length = 516
Score = 32.7 bits (71), Expect = 0.20
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = -2
Query: 399 FHRPKIVICMEHFFLNLNQFGLRLGFDLLYPPQTDVCILRSRRY 268
FHRPKIV+ + H L N F + F LL CI+ ++ Y
Sbjct: 376 FHRPKIVLLLIHIVLFQNAFEIAFFFWLLVTYGFKSCIMGNKGY 419
>11_06_0627 + 25633537-25633884,25635246-25635869
Length = 323
Score = 31.9 bits (69), Expect = 0.36
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Frame = +2
Query: 2 STDSTIKVWERIEGTVTLKQSIS---LH--SGLCLTLHAQILPCANKPLLLCALDDHKIH 166
S D + ++GT+ + ++ LH G + + + + + +L A DD IH
Sbjct: 169 SPDGKLLACGSMDGTIAVYDAVRMKFLHHLEGHHMPVRSMVFSPVDPHVLFTASDDCHIH 228
Query: 167 IFVGEDYHRAHTLVGHEDWVRGLDV 241
I+ ++ + GH WV +DV
Sbjct: 229 IYDAKEKSLIGAMSGHASWVLSIDV 253
>09_01_0139 - 2074193-2077146,2077549-2078043,2078983-2079190
Length = 1218
Score = 30.7 bits (66), Expect = 0.82
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +2
Query: 17 IKVWERIEGTVTLKQSISLHSGLCLTLHAQILPCANKPLLLCALDDHKIHIFVGEDYHRA 196
I++W+ GT L H G +H A +PL + DD+KI ++ + +
Sbjct: 33 IQMWDYRMGT--LLDRFDEHDGPVRGVHFH----ATQPLFVSGGDDYKIKVWNYKTHRCL 86
Query: 197 HTLVGHEDWVR 229
TL GH D++R
Sbjct: 87 FTLHGHLDYIR 97
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +1
Query: 265 IVASASQDTYIRLWRI---QKVKAQPESKLIKVEEKVFHAYDNLWSVKLEAVLAGHEA*V 435
+V SAS D +R+W I +K P ++++ + + + +V ++ VL GH+ V
Sbjct: 149 LVVSASLDQTVRVWDIGALRKKTVSPADDILRLTQMNTDLFGGVDAV-VKYVLEGHDRGV 207
Query: 436 YGVQWHP 456
+HP
Sbjct: 208 NWASFHP 214
>03_05_0887 - 28527602-28530555,28531296-28531790,28532377-28532584
Length = 1218
Score = 30.7 bits (66), Expect = 0.82
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +2
Query: 17 IKVWERIEGTVTLKQSISLHSGLCLTLHAQILPCANKPLLLCALDDHKIHIFVGEDYHRA 196
I++W+ GT L H G +H A +PL + DD+KI ++ + +
Sbjct: 33 IQMWDYRMGT--LLDRFDEHDGPVRGVHFH----ATQPLFVSGGDDYKIKVWNYKTHRCL 86
Query: 197 HTLVGHEDWVR 229
TL GH D++R
Sbjct: 87 FTLHGHLDYIR 97
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +1
Query: 265 IVASASQDTYIRLWRI---QKVKAQPESKLIKVEEKVFHAYDNLWSVKLEAVLAGHEA*V 435
+V SAS D +R+W I +K P ++++ + + + +V ++ VL GH+ V
Sbjct: 149 LVVSASLDQTVRVWDISALRKKSVSPADDILRLTQMNTDLFGGVDAV-VKYVLEGHDRGV 207
Query: 436 YGVQWHP 456
+HP
Sbjct: 208 NWASFHP 214
>03_05_0886 - 28516210-28519163,28519577-28520071,28520757-28520964
Length = 1218
Score = 30.7 bits (66), Expect = 0.82
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +2
Query: 17 IKVWERIEGTVTLKQSISLHSGLCLTLHAQILPCANKPLLLCALDDHKIHIFVGEDYHRA 196
I++W+ GT L H G +H A +PL + DD+KI ++ + +
Sbjct: 33 IQMWDYRMGT--LLDRFDEHDGPVRGVHFH----ATQPLFVSGGDDYKIKVWNYKTHRCL 86
Query: 197 HTLVGHEDWVR 229
TL GH D++R
Sbjct: 87 FTLHGHLDYIR 97
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +1
Query: 265 IVASASQDTYIRLWRI---QKVKAQPESKLIKVEEKVFHAYDNLWSVKLEAVLAGHEA*V 435
+V SAS D +R+W I +K P ++++ + + + +V ++ VL GH+ V
Sbjct: 149 LVVSASLDQTVRVWDIGALRKKTVSPADDILRLTQMNTDLFGGVDAV-VKYVLEGHDRGV 207
Query: 436 YGVQWHP 456
+HP
Sbjct: 208 NWASFHP 214
>02_04_0389 - 22570374-22570718,22570807-22570815
Length = 117
Score = 30.7 bits (66), Expect = 0.82
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 352 VEEKVFHA-YDNLWSVKLEAVLAGHEA*VYGVQWHPYSFDGPTKKPVYRLLSSYWT 516
+ +KV HA + VK E H Y +HPY+F P + VY+ +S W+
Sbjct: 60 LRKKVGHATLMTVGEVKKEEKKPEHAVVEYPWSYHPYTFAPPAQHVVYQYPASSWS 115
>02_01_0726 +
5440341-5440661,5441574-5441620,5442917-5442977,
5442978-5443035,5443303-5443463,5443692-5443808,
5443888-5443989,5444834-5444908,5444996-5445084,
5445171-5445220,5445562-5445641,5445744-5445953,
5446103-5446170,5446363-5446423,5446719-5447081
Length = 620
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -2
Query: 399 FHRPKIVICMEHFFLNLNQFGLRLGFDLLYPPQTDVCILRSRRY 268
F +P+IV+ + HF L N F + F +L D CI+ ++ Y
Sbjct: 429 FSKPRIVLHLIHFILFQNSFEMGFFFWVLATYGFDSCIMENKIY 472
>02_05_1320 - 35693575-35694846
Length = 423
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 275 RLLKIHTSVCGGYKRSKPNRSPN*LRLRKKCS 370
+ LK +T+ GG +R KPN S LR+ CS
Sbjct: 239 QFLKDNTTAAGGKRRLKPNVSTYNLRMASLCS 270
>09_06_0121 +
20975132-20975755,20976834-20976977,20977333-20977457,
20978090-20978194,20978755-20978989
Length = 410
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 355 EEKVFHAYDNLWSVKLEAVLAGHEA*VYGVQWHP 456
E V+H D + VL GHEA YG+ W P
Sbjct: 139 EVHVYHLGDGGEKGGADVVLRGHEAEGYGLAWSP 172
>02_01_0443 + 3204142-3204674,3205446-3206178
Length = 421
Score = 27.9 bits (59), Expect = 5.8
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 262 IIVASASQDTYIRLWRIQKVKAQPESKLIK-VEEKVFHAYDNLWSVKLEAVLAG 420
++ A A +D R + V PES L + +E+ V H LW V E +LAG
Sbjct: 344 VLAADADEDEERRR---EMVTCSPESTLGEAIEKAVAHHVHRLWVVDEEGLLAG 394
>01_06_0884 + 32715963-32716284,32716837-32717567
Length = 350
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +2
Query: 107 ILPCANKPLLLCALDDHKIHIFVGEDYHRAHTLVGHED--WV 226
ILP A P + C L D+ H V D+ R +G D WV
Sbjct: 58 ILPLAEGPAVSCILSDYATHPAVVPDWVRYARYIGAYDDGWV 99
>04_01_0421 -
5565494-5565592,5565898-5565984,5567164-5567253,
5567366-5567532,5567541-5567799
Length = 233
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -3
Query: 389 QRLSYAWNTFSSTLISLDSGWALTFCILHKRMYVS*EADATII 261
QR+SYA N + S I L S C++ ++V E + ++
Sbjct: 178 QRISYATNRYQSIPIGLSSITRYLVCLVMTSLHVGYEGNGKVV 220
>03_05_1069 + 30118930-30120120
Length = 396
Score = 27.5 bits (58), Expect = 7.7
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Frame = +2
Query: 2 STDSTIKVWER-IEGTVTLKQSISLHSGLCLTLHA--QILPCANKPLLLCALDDHKIHIF 172
S D T+KVW+R ++G T ++ L HA + A P+L C D ++ +
Sbjct: 194 SADGTVKVWKRELQGKGTKHVAVQT---LLKQEHAVNALAVSAVAPVLYCGSSDGLVNFW 250
Query: 173 VGEDYHRAH--TLVGHE 217
GE H H L GH+
Sbjct: 251 EGE-RHLVHGGVLRGHK 266
>01_06_1609 +
38621264-38621386,38621521-38621578,38621778-38622013,
38622536-38622652,38622690-38622798,38622973-38623064,
38623191-38623265,38623333-38623421,38623576-38623625,
38623830-38623870,38623963-38624172,38624278-38624345,
38624434-38624494,38624607-38624840
Length = 520
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 399 FHRPKIVICMEHFFLNLNQFGLRLGFDLLYPPQTDVCIL 283
F RPK+++ + HF L N F + F +L + CI+
Sbjct: 372 FGRPKVILYLIHFILFQNAFEIAFFFWILTTYGFNSCIM 410
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,835,759
Number of Sequences: 37544
Number of extensions: 367880
Number of successful extensions: 958
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -