Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021890
(559 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.091
SB_36541| Best HMM Match : WD40 (HMM E-Value=0) 32 0.28
SB_28982| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_3142| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_34371| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_8327| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_37875| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_32323| Best HMM Match : WD40 (HMM E-Value=0) 28 5.9
SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08) 28 5.9
SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34) 28 5.9
>SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1649
Score = 33.9 bits (74), Expect = 0.091
Identities = 24/76 (31%), Positives = 38/76 (50%)
Frame = +2
Query: 8 DSTIKVWERIEGTVTLKQSISLHSGLCLTLHAQILPCANKPLLLCALDDHKIHIFVGEDY 187
D +I+VW+ G K + H+ L TL + P A+ L+ DH + I+ +
Sbjct: 727 DGSIRVWDYETGKELNK--LLDHTKLVYTL--ALSPHAD--FLVSGAFDHTVKIWDMDTL 780
Query: 188 HRAHTLVGHEDWVRGL 235
HTL GH++WV G+
Sbjct: 781 SLVHTLKGHKNWVSGV 796
>SB_36541| Best HMM Match : WD40 (HMM E-Value=0)
Length = 1070
Score = 32.3 bits (70), Expect = 0.28
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +2
Query: 8 DSTIKVWE--RIEGTVTLKQSISLHSGLCLTLHAQILPCANKPLLLCALDDHKIHIFVGE 181
D+ IKVW+ R+E TLK SL + ++ ++ A+K D + ++ E
Sbjct: 441 DNNIKVWDLVRLECQATLKGHTSLIWAIAVSRDDSVIVSASK--------DDLLKVWRTE 492
Query: 182 DYHRAHTLVGHEDWV 226
+ TL+GH W+
Sbjct: 493 SWVCTQTLIGHSSWI 507
>SB_28982| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1287
Score = 30.3 bits (65), Expect = 1.1
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Frame = -2
Query: 501 QETVYRLLSRTIK-----TIRMPLYPIDSGF-MTGKHCLKFHR---PKIVICMEHFFLNL 349
+E +Y+++ K IR +Y I G KH FHR P+ ++C H + +
Sbjct: 49 KENLYQMMKNRDKLLPESVIRNVIYQILQGLAFIHKHGY-FHRDMKPENLLCTGHELVKI 107
Query: 348 NQFGLRLGFDLLYPPQTDVCILRSRRYDNCVVSTSNTSSPL 226
FGL PP TD R R ++ ++N SSP+
Sbjct: 108 ADFGLARE-TRSRPPYTDYVSTRWYRAPEVLLRSTNYSSPI 147
>SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +3
Query: 63 VYLYILVYVSPFTRKYYHAQINRYYFVHWMTTKYIYSLV 179
+Y+YI +Y+ +T Y + Y + + T Y Y+ V
Sbjct: 17 IYIYIYIYIYIYTYTYTYTYTYTYTYTYTYTYTYTYTYV 55
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +3
Query: 63 VYLYILVYVSPFTRKYYHAQINRYYFVHWMTTKYIYSLV 179
+Y+YI +Y +T Y + Y + + T Y+Y V
Sbjct: 21 IYIYIYIYTYTYTYTYTYTYTYTYTYTYTYTYTYVYVYV 59
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +3
Query: 63 VYLYILVYVSPFTRKYYHAQINRYYFVHWMTTKYIYSLV 179
+Y+YI +Y+ +T Y + Y + + T Y Y V
Sbjct: 19 IYIYIYIYIYTYTYTYTYTYTYTYTYTYTYTYTYTYVYV 57
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = +3
Query: 63 VYLYILVYVSPFTRKYYHAQINRYYFVHWMTTKYIYSLVRTIT 191
+Y+YI +Y+ + Y + Y + + T Y Y+ T T
Sbjct: 11 IYIYIYIYIYIYIYIYIYTYTYTYTYTYTYTYTYTYTYTYTYT 53
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +3
Query: 63 VYLYILVYVSPFTRKYYHAQINRYYFVHWMTTKYIYSLV 179
+Y+YI Y +T Y + Y + + T Y+Y V
Sbjct: 23 IYIYIYTYTYTYTYTYTYTYTYTYTYTYTYTYVYVYVYV 61
>SB_3142| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2209
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/56 (23%), Positives = 26/56 (46%)
Frame = +3
Query: 69 LYILVYVSPFTRKYYHAQINRYYFVHWMTTKYIYSLVRTITERILWLDTKTGLGDL 236
LY+L + + +A I+ +F+HW +++L +R L + KT +
Sbjct: 980 LYLLAALFDHEAMFCYAGISARFFLHWFAAVSVFTLAVISVDRFLAVRLKTAYSSI 1035
>SB_34371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 644
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/82 (25%), Positives = 41/82 (50%)
Frame = +2
Query: 2 STDSTIKVWERIEGTVTLKQSISLHSGLCLTLHAQILPCANKPLLLCALDDHKIHIFVGE 181
S D T+KVW + G ++++ H+G + +Q+ + +++ D + ++ E
Sbjct: 336 SDDGTLKVWSALSGKCL--RTLTGHTGGVWS--SQL----SGHIIVSGSTDRTLKVWNAE 387
Query: 182 DYHRAHTLVGHEDWVRGLDVLE 247
+ HTL GH VR +D+ E
Sbjct: 388 TGYCMHTLYGHTSTVRCMDMHE 409
>SB_8327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 28.7 bits (61), Expect = 3.4
Identities = 27/79 (34%), Positives = 35/79 (44%)
Frame = +2
Query: 23 VWERIEGTVTLKQSISLHSGLCLTLHAQILPCANKPLLLCALDDHKIHIFVGEDYHRAHT 202
+WER E TL + I L G L + ++ L CA H IH++ E HT
Sbjct: 1 MWEREEILQTLGK-IRLVGGESLVSVPPVFSKDSRNLF-CACGRH-IHVYSTETGSLQHT 57
Query: 203 LVGHEDWVRGLDVLEVDTT 259
L GH V G + DTT
Sbjct: 58 LKGHTSQVVG---ISADTT 73
>SB_37875| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 544
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 265 IVASASQDTYIRLWRIQKVKAQPESKLIKVEEKVFHA 375
++AS SQD +RLW ++ K + E K ++ HA
Sbjct: 115 LLASTSQDRTVRLWSVKDFK-EKEHKYVRANVDFDHA 150
>SB_32323| Best HMM Match : WD40 (HMM E-Value=0)
Length = 611
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 125 KPLLLCALDDHKIHIFVGEDYHRAHTLVGHEDWVR 229
+PL + DD+KI ++ + TL+GH D++R
Sbjct: 63 QPLFVSGGDDYKIKVWNYKQKRCLFTLLGHLDYIR 97
>SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08)
Length = 1052
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = -3
Query: 254 YQLPTRQVP*PSLRVQPEYALCDSPHQRI---YVFCGHPVHKVIAVY 123
Y +PT + P P R P Y P++++ Y HP +V A Y
Sbjct: 647 YPIPTNRYPLPKNRYPPPYKQVPPPYKQVPHPYKQVPHPYKQVPAPY 693
>SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34)
Length = 524
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = -2
Query: 306 PQTDVCILRSRRYDNCVVSTSNTSSPL-TQSSCPTRVCAL**SSPTN 169
P +C L +C T T P+ T S P R+CAL PT+
Sbjct: 405 PPDRLCALYRHHQTDCAHCTDTTRQPVHTVQSPPDRLCALYRHHPTD 451
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,834,581
Number of Sequences: 59808
Number of extensions: 446707
Number of successful extensions: 1234
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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