Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021890
(559 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132904-13|CAC35846.4| 778|Caenorhabditis elegans Hypothetical... 35 0.046
Z81113-5|CAB03282.3| 404|Caenorhabditis elegans Hypothetical pr... 30 1.3
AF164430-1|AAF82632.1| 404|Caenorhabditis elegans LIS-1 protein. 30 1.3
AL032627-14|CAA21549.1| 386|Caenorhabditis elegans Hypothetical... 28 4.0
Z83106-2|CAB05494.1| 321|Caenorhabditis elegans Hypothetical pr... 28 5.2
AF106576-4|AAC78176.1| 473|Caenorhabditis elegans Hypothetical ... 28 5.2
Z79757-3|CAC42307.1| 585|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z79757-2|CAB02129.2| 587|Caenorhabditis elegans Hypothetical pr... 27 6.9
AF020788-1|AAC47809.1| 587|Caenorhabditis elegans SEL-10 protein. 27 6.9
AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical... 27 6.9
AC024845-2|AAF60851.1| 324|Caenorhabditis elegans Hypothetical ... 27 9.1
>AL132904-13|CAC35846.4| 778|Caenorhabditis elegans Hypothetical
protein Y111B2A.17 protein.
Length = 778
Score = 34.7 bits (76), Expect = 0.046
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 12/77 (15%)
Frame = +1
Query: 256 DTIIVASASQDTYIRLWRIQKVKAQPESKLIKVEEKV-----FHAYDNLWSVKL------ 402
D ++VASA QDTY+RLW I+ + +S+ I+ + + NL+S+
Sbjct: 220 DHLLVASAGQDTYVRLWAIEP-ETDEKSENIREDSSTTPPDELTSSANLFSINYTPYRCS 278
Query: 403 -EAVLAGHEA*VYGVQW 450
AV+ GH+ V+ W
Sbjct: 279 SHAVMQGHDDWVHSTVW 295
>Z81113-5|CAB03282.3| 404|Caenorhabditis elegans Hypothetical
protein T03F6.5 protein.
Length = 404
Score = 29.9 bits (64), Expect = 1.3
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +2
Query: 2 STDSTIKVWERIEGTVTLKQSISLHSGLCLTLHAQILPCANKPLLLCALD-DHKIHIFVG 178
S D+TIKVW+ G L++++ H+ ++ + A K L+ C+ D K+ F G
Sbjct: 125 SEDATIKVWDYETG--QLERTLKGHTD---AVNDIAIDAAGKQLVSCSSDLSIKLWDF-G 178
Query: 179 EDYHRAHTLVGHEDWVRGLDVLEVDTTQLS 268
+ Y +L GHE V + L LS
Sbjct: 179 QTYDCLKSLKGHEHTVSSVTFLPTGDFVLS 208
Score = 27.9 bits (59), Expect = 5.2
Identities = 22/76 (28%), Positives = 35/76 (46%)
Frame = +2
Query: 2 STDSTIKVWERIEGTVTLKQSISLHSGLCLTLHAQILPCANKPLLLCALDDHKIHIFVGE 181
S+D +IK+W+ T +S+ H ++ LP + +L A DH I +
Sbjct: 167 SSDLSIKLWD-FGQTYDCLKSLKGHEHTVSSV--TFLPTGD--FVLSASRDHTIKQWDIS 221
Query: 182 DYHRAHTLVGHEDWVR 229
+ +T GH DWVR
Sbjct: 222 TGYCVYTFRGHNDWVR 237
>AF164430-1|AAF82632.1| 404|Caenorhabditis elegans LIS-1 protein.
Length = 404
Score = 29.9 bits (64), Expect = 1.3
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +2
Query: 2 STDSTIKVWERIEGTVTLKQSISLHSGLCLTLHAQILPCANKPLLLCALD-DHKIHIFVG 178
S D+TIKVW+ G L++++ H+ ++ + A K L+ C+ D K+ F G
Sbjct: 125 SEDATIKVWDYETG--QLERTLKGHTD---AVNDIAIDAAGKQLVSCSSDLSIKLWDF-G 178
Query: 179 EDYHRAHTLVGHEDWVRGLDVLEVDTTQLS 268
+ Y +L GHE V + L LS
Sbjct: 179 QTYDCLKSLKGHEHTVSSVTFLPTGDFVLS 208
Score = 27.9 bits (59), Expect = 5.2
Identities = 22/76 (28%), Positives = 35/76 (46%)
Frame = +2
Query: 2 STDSTIKVWERIEGTVTLKQSISLHSGLCLTLHAQILPCANKPLLLCALDDHKIHIFVGE 181
S+D +IK+W+ T +S+ H ++ LP + +L A DH I +
Sbjct: 167 SSDLSIKLWD-FGQTYDCLKSLKGHEHTVSSV--TFLPTGD--FVLSASRDHTIKQWDIS 221
Query: 182 DYHRAHTLVGHEDWVR 229
+ +T GH DWVR
Sbjct: 222 TGYCVYTFRGHNDWVR 237
>AL032627-14|CAA21549.1| 386|Caenorhabditis elegans Hypothetical
protein Y41C4A.11 protein.
Length = 386
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 125 KPLLLCALDDHKIHIFVGEDYHRAHTLVGHEDWVRGLDV 241
K + A DD +I IF E + + H D++R L V
Sbjct: 161 KNWIATASDDQQIRIFDAETFSLINEFTAHSDFIRSLTV 199
>Z83106-2|CAB05494.1| 321|Caenorhabditis elegans Hypothetical
protein F22B8.3 protein.
Length = 321
Score = 27.9 bits (59), Expect = 5.2
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 371 WNTFSSTLISLDSGWALTFCILH 303
W FS + + GW L FCI++
Sbjct: 125 WAVFSESKLKFFKGWRLIFCIMY 147
>AF106576-4|AAC78176.1| 473|Caenorhabditis elegans Hypothetical
protein W07E6.2 protein.
Length = 473
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/76 (22%), Positives = 31/76 (40%)
Frame = +2
Query: 8 DSTIKVWERIEGTVTLKQSISLHSGLCLTLHAQILPCANKPLLLCALDDHKIHIFVGEDY 187
D I +W+ ++GTV + +S H T L + L+ D + ++ +D
Sbjct: 216 DGNIFIWDTVQGTVV--RCLSGH-----TASVTCLRWGGEGLIYSGSQDRTVKMWRADDG 268
Query: 188 HRAHTLVGHEDWVRGL 235
+ GH W+ L
Sbjct: 269 VMCRNMTGHAHWINTL 284
>Z79757-3|CAC42307.1| 585|Caenorhabditis elegans Hypothetical
protein F55B12.3b protein.
Length = 585
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +2
Query: 2 STDSTIKVWERIEGTVTLKQSISLHSGLCLTLHAQILPCANKPLLLCALD-DHKIHIFVG 178
STD T+KVW ++G++ + C+ + IL ++ L D + H+
Sbjct: 313 STDRTVKVWSTVDGSLLHTLQGHTSTVRCMAMAGSILVTGSRDTTLRVWDVESGRHLATL 372
Query: 179 EDYHRA 196
+H A
Sbjct: 373 HGHHAA 378
>Z79757-2|CAB02129.2| 587|Caenorhabditis elegans Hypothetical
protein F55B12.3a protein.
Length = 587
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +2
Query: 2 STDSTIKVWERIEGTVTLKQSISLHSGLCLTLHAQILPCANKPLLLCALD-DHKIHIFVG 178
STD T+KVW ++G++ + C+ + IL ++ L D + H+
Sbjct: 315 STDRTVKVWSTVDGSLLHTLQGHTSTVRCMAMAGSILVTGSRDTTLRVWDVESGRHLATL 374
Query: 179 EDYHRA 196
+H A
Sbjct: 375 HGHHAA 380
>AF020788-1|AAC47809.1| 587|Caenorhabditis elegans SEL-10 protein.
Length = 587
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +2
Query: 2 STDSTIKVWERIEGTVTLKQSISLHSGLCLTLHAQILPCANKPLLLCALD-DHKIHIFVG 178
STD T+KVW ++G++ + C+ + IL ++ L D + H+
Sbjct: 315 STDRTVKVWSTVDGSLLHTLQGHTSTVRCMAMAGSILVTGSRDTTLRVWDVESGRHLATL 374
Query: 179 EDYHRA 196
+H A
Sbjct: 375 HGHHAA 380
>AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical
protein Y71F9AL.17 protein.
Length = 1232
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 122 NKPLLLCALDDHKIHIFVGEDYHRAHTLVGHEDWVR 229
++P+ + DD+KI ++ + TL+GH D++R
Sbjct: 64 DQPIFVSGGDDYKIKVWNYKQKRCIFTLLGHLDYIR 99
>AC024845-2|AAF60851.1| 324|Caenorhabditis elegans Hypothetical
protein Y65B4BL.4 protein.
Length = 324
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 264 NCVVSTSNTSSPLTQSSCPT 205
NCV+ST+ TS P T +S T
Sbjct: 274 NCVISTATTSIPSTSTSSTT 293
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,506,696
Number of Sequences: 27780
Number of extensions: 324771
Number of successful extensions: 929
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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