Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021890
         (559 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.8  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   4.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   4.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   4.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   8.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 550  LLEYGSQIIRVLSSMMTGDGIPAS 479
            L +Y +  I+VL+    GDG+P +
Sbjct: 1180 LRKYTNYTIQVLAFTRVGDGVPTT 1203


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 550  LLEYGSQIIRVLSSMMTGDGIPAS 479
            L +Y +  I+VL+    GDG+P +
Sbjct: 1176 LRKYTNYTIQVLAFTRVGDGVPTT 1199


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 212 VQPEYALCDSPHQRIYVFCGHPVHKVIAVYLRMVV 108
           V PEY+    PH R +   G   H  +A+   M++
Sbjct: 34  VPPEYSDLVRPHWRAFPAPGKHFHIGLAIIYSMLL 68


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +3

Query: 111 YHAQINRYYFVHWMTTKYIYSLVRTITERILWLDTKT 221
           Y   I+R+Y +   T       +  +T  +LWLD+++
Sbjct: 244 YEFSISRHYGILHATYVIPAVTMMLLTLTVLWLDSRS 280


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 212 VQPEYALCDSPHQRIYVFCGHPVHKVIAVYLRMVV 108
           V PEY+    PH R +   G   H  +A+   M++
Sbjct: 34  VPPEYSDLVHPHWRAFPAPGKHFHIGLAIIYSMLL 68


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +3

Query: 111 YHAQINRYYFVHWMTTKYIYSLVRTITERILWLD 212
           Y+  + R+Y ++  T   +  ++ T+T   LWL+
Sbjct: 235 YNILLRRHYSMNSTTYVTLTIVLMTMTLMTLWLE 268


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,020
Number of Sequences: 438
Number of extensions: 4029
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)