Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021890
(559 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g49540.1 68414.m05553 transducin family protein / WD-40 repea... 44 9e-05
At5g63010.1 68418.m07905 WD-40 repeat family protein contains 4 ... 33 0.098
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 32 0.23
At4g24250.1 68417.m03480 seven transmembrane MLO family protein ... 32 0.23
At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2 pro... 31 0.39
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 31 0.69
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea... 31 0.69
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 31 0.69
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 30 0.91
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 30 0.91
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 29 2.1
At4g02600.1 68417.m00354 seven transmembrane MLO family protein ... 29 2.8
At2g44110.2 68415.m05486 seven transmembrane MLO family protein ... 29 2.8
At2g44110.1 68415.m05485 seven transmembrane MLO family protein ... 29 2.8
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 24 3.3
At3g26200.1 68416.m03269 cytochrome P450 71B22, putative (CYP71B... 28 4.9
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 28 4.9
At1g44180.1 68414.m05103 aminoacylase, putative / N-acyl-L-amino... 28 4.9
At4g38220.2 68417.m05395 aminoacylase, putative / N-acyl-L-amino... 27 6.4
At4g29380.1 68417.m04197 protein kinase family protein / WD-40 r... 27 8.5
At1g70160.1 68414.m08073 expressed protein similar to hypothetic... 27 8.5
>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
family protein similar to signal transducer and
activator of transcription interacting protein 1
(GI:15929722) {Mus musculus}; similar to hypothetical
protein GB:AAD43147 GI:5430747 from (Arabidopsis
thaliana); contains Pfam PF00400: WD domain, G-beta
repeat (11 copies, 2 weak)
Length = 840
Score = 43.6 bits (98), Expect = 9e-05
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Frame = +1
Query: 256 DTIIVASASQDTYIRLWRIQKV----KAQPESKLIK-VEEKVFHAYDNLWSVKLEAVLAG 420
++I++ S+SQD IR+W++ V + E L +E VF + + + +E+VL G
Sbjct: 243 NSIMLVSSSQDKVIRIWKLVLVGDVGSWRREITLASYIEGPVFVSGTFTYQISVESVLIG 302
Query: 421 HEA*VYGVQWHPYSFD 468
HE VY V+W P D
Sbjct: 303 HEDWVYSVEWQPPVID 318
Score = 31.5 bits (68), Expect = 0.39
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 13/100 (13%)
Frame = +2
Query: 2 STDSTIKVWE-------RIEGTVTLKQSISLHSGLCLTLHAQILPCANKPLLLCALD--D 154
S+D + VW+ E V SI + + +TL LP N AL D
Sbjct: 141 SSDGVVNVWDVSFPSQPSEECKVVCLDSICVDTKAIVTLSLAELP-QNPGRFALALGGLD 199
Query: 155 HKIHIFVGE---DYHRAHTLVGHEDWVRGLDV-LEVDTTQ 262
+KI ++ GE + L GH DW+R LD L + TT+
Sbjct: 200 NKIKLYSGERTGKFTSVCELKGHTDWIRSLDFSLPLHTTE 239
>At5g63010.1 68418.m07905 WD-40 repeat family protein contains 4
WD-40 repeats (PF00400);low similarity to
photomorphogenesis repressor (COP1) GI:2702280
[Arabidopsis thaliana] and COP1 GI:11127996 [Ipomoea
nil]
Length = 343
Score = 33.5 bits (73), Expect = 0.098
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Frame = +2
Query: 2 STDSTIKVWERIEGTVTLKQ-SISLHSGLCLTLHAQILP------CANKPLLLCALDDHK 160
S D T++VW+ + L + S+SL G+ H L C + L + D K
Sbjct: 230 SYDETLRVWDTRSVSRPLNETSVSLGGGVWRIKHHPSLSGVVLAACMHNGFALAKVSDGK 289
Query: 161 IHIFVGEDYHRAHTLVGHEDWVRGLD 238
+ E Y++ H+L DW RG D
Sbjct: 290 GEVL--ESYNKHHSLAYGADWYRGKD 313
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 32.3 bits (70), Expect = 0.23
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Frame = +2
Query: 2 STDSTIKVWERIEG-----TVTLKQSISLHSGLCLTLHAQILPCANKPLLLCALDDHKIH 166
S D+T+K+W EG T T K+ + + LC A+ KP+LLC+ +D+ +H
Sbjct: 324 SLDNTVKIWAATEGGNLEVTYTHKEEYGVLA-LCGVHDAEA-----KPVLLCSCNDNSLH 377
Query: 167 IF 172
++
Sbjct: 378 LY 379
>At4g24250.1 68417.m03480 seven transmembrane MLO family protein /
MLO-like protein 13 (MLO13) identical to membrane
protein Mlo13 [Arabidopsis thaliana]
gi|14091596|gb|AAK53806; similar to MLO protein
SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum
vulgare][Barley]
Length = 478
Score = 32.3 bits (70), Expect = 0.23
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 399 FHRPKIVICMEHFFLNLNQFGLRLGFDLLYPPQTDVCILRSRRY 268
FHRP IV+ + HF L N F + F +L+ CI+ Y
Sbjct: 352 FHRPGIVLQLIHFILFQNSFEIAFFFWILFTYGIHSCIMEKLGY 395
>At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative 99.8% identical to zfwd2
protein (GI:12057166) [Arabidopsis thaliana]; contains 6
copies (2 weak) Pfam PF00400: WD domain, G-beta repeat;
contains Pfam PF00642: Zinc finger C-x8-C-x5-C-x3-H type
(and similar) domain
Length = 437
Score = 31.5 bits (68), Expect = 0.39
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = +2
Query: 2 STDSTIKVWERIEG-----TVTLKQSISLHSGLCLTLHAQILPCANKPLLLCALDDHKIH 166
S D+T+K+W IEG T T K+ H L L + KP+LLCA +D+ +
Sbjct: 331 SLDNTVKIWAAIEGGNLEVTYTHKEE---HGVLAL---CGVHDAEAKPVLLCACNDNTLR 384
Query: 167 IF 172
++
Sbjct: 385 LY 386
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 30.7 bits (66), Expect = 0.69
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 134 LLCALDDHKIHIFVGEDYHRAHTLVGHEDWVRGLDVLEVDT--TQLS*RRLLKIHTS 298
L A D K++I+ G D+ +L GHE V LD+ + +S R +K+ TS
Sbjct: 481 LATASYDMKVNIWSGRDFSLVKSLAGHESKVASLDITADSSCIATVSHDRTIKLWTS 537
>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
family protein Similar to U4/U6 small nuclear
ribonucleoprotein hPrp4 (gi:2708305)[Homo sapiens];
contains 4 WD-40 repeats
Length = 276
Score = 30.7 bits (66), Expect = 0.69
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 134 LLCALDDHKIHIFVGEDYHRAHTLVGHEDWVRGLDV 241
L A D ++I+ G D+ +LVGHE V LD+
Sbjct: 230 LATASHDMNVNIWSGRDFSLVKSLVGHESKVASLDI 265
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 30.7 bits (66), Expect = 0.69
Identities = 20/71 (28%), Positives = 36/71 (50%)
Frame = +2
Query: 17 IKVWERIEGTVTLKQSISLHSGLCLTLHAQILPCANKPLLLCALDDHKIHIFVGEDYHRA 196
I++W+ GT L H G +H ++PL + DD+KI ++ +++
Sbjct: 33 IQLWDYRMGT--LIDRFDEHEGPVRGVHFH----NSQPLFVSGGDDYKIKVWNYKNHRCL 86
Query: 197 HTLVGHEDWVR 229
TL+GH D++R
Sbjct: 87 FTLLGHLDYIR 97
Score = 27.5 bits (58), Expect = 6.4
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +1
Query: 265 IVASASQDTYIRLWRI---QKVKAQPESKLIKVEEKVFHAYDNLWSVKLEAVLAGHEA*V 435
+V SAS D +R+W I +K P ++++ + + + ++ ++ VL GH+ V
Sbjct: 149 LVVSASLDQTVRVWDIGALRKKTVSPADDIMRLTQMNSDLFGGVDAI-VKYVLEGHDRGV 207
Query: 436 YGVQWHP 456
+HP
Sbjct: 208 NWAAFHP 214
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 30.3 bits (65), Expect = 0.91
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +1
Query: 265 IVASASQDTYIRLWRI---QKVKAQPESKLIKVEEKVFHAYDNLWSVKLEAVLAGHEA*V 435
+V SAS D +R+W I +K A P L++ + + + ++ ++ VL GH+ V
Sbjct: 149 LVVSASLDQTVRVWDIGALKKKSASPADDLMRFSQMNSDLFGGVDAI-VKYVLEGHDRGV 207
Query: 436 YGVQWHP 456
+HP
Sbjct: 208 NWASFHP 214
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/71 (28%), Positives = 35/71 (49%)
Frame = +2
Query: 17 IKVWERIEGTVTLKQSISLHSGLCLTLHAQILPCANKPLLLCALDDHKIHIFVGEDYHRA 196
I++W+ GT L H G +H ++PL + DD+KI ++ + +
Sbjct: 33 IQLWDYRMGT--LIDRFDEHEGPVRGVHFH----NSQPLFVSGGDDYKIKVWNYKTHRCL 86
Query: 197 HTLVGHEDWVR 229
TL+GH D++R
Sbjct: 87 FTLLGHLDYIR 97
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 30.3 bits (65), Expect = 0.91
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 2 STDSTIKVWERIEGTVTLKQSISLHSGLCLTLHA 103
S D ++ WE EG + ++I+LHS L+++A
Sbjct: 1081 SADGLLRFWENDEGGIKCVKNITLHSSSILSINA 1114
Score = 27.9 bits (59), Expect = 4.9
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 15/82 (18%)
Frame = +1
Query: 259 TIIVASASQDTYIRLWRI----QKVKAQPESKLIK----VEEKVFHAYDN----LWSV-- 396
T I+A+A +DT +W I Q K + +K I+ VE+ + D+ +WSV
Sbjct: 992 TGILAAAGRDTVANIWDIRSGKQMHKLKGHTKWIRSIRMVEDTLITGSDDWTARVWSVSR 1051
Query: 397 -KLEAVLAGHEA*VYGVQWHPY 459
+AVLA H V V++ P+
Sbjct: 1052 GSCDAVLACHAGPVQSVEYSPF 1073
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 29.1 bits (62), Expect = 2.1
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Frame = +2
Query: 14 TIKVWERIEGTVTLKQSISLHSGLCLTLH-AQILPCANKPL---LLCALDDHKIHIFVGE 181
T VW + G T+ + LH L H IL C P L A D + I+ +
Sbjct: 185 TCYVWRLLRGKQTMTEFEPLHK---LQAHNGHILKCLLSPANKYLATASSDKTVKIWNVD 241
Query: 182 DYHRAHTLVGHEDWV 226
+ L GH+ WV
Sbjct: 242 GFKLEKVLTGHQRWV 256
>At4g02600.1 68417.m00354 seven transmembrane MLO family protein /
MLO-like protein 1 (MLO1) identical to MLO-like protein
1 (MLO protein homolog 1) [Arabidopsis thaliana]
SWISS-PROT:O49621; similar to MLO protein
SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum
vulgare][Barley]
Length = 526
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -2
Query: 399 FHRPKIVICMEHFFLNLNQFGLRLGFDLLYPPQTDVCILRSRRY 268
F +P+IV+ + HF L N F + F + D CI+ RY
Sbjct: 364 FSKPQIVLYLIHFILFQNAFEIAFFFWIWVTYGFDSCIMGQVRY 407
>At2g44110.2 68415.m05486 seven transmembrane MLO family protein /
MLO-like protein 15 (MLO15) identical to MLO-like
protein 15 (AtMlo15) SP:O80580 from [Arabidopsis
thaliana]; similar to MLO protein SWISS-PROT:P93766,
NCBI_gi:1877221 [Hordeum vulgare][Barley]
Length = 497
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 399 FHRPKIVICMEHFFLNLNQFGLRLGFDLLYPPQTDVCIL 283
F P++V+ + HF L N F + F +L+ D CI+
Sbjct: 350 FQSPRLVLFLIHFILFQNSFEIAYFFFILFQFGWDSCIM 388
>At2g44110.1 68415.m05485 seven transmembrane MLO family protein /
MLO-like protein 15 (MLO15) identical to MLO-like
protein 15 (AtMlo15) SP:O80580 from [Arabidopsis
thaliana]; similar to MLO protein SWISS-PROT:P93766,
NCBI_gi:1877221 [Hordeum vulgare][Barley]
Length = 496
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 399 FHRPKIVICMEHFFLNLNQFGLRLGFDLLYPPQTDVCIL 283
F P++V+ + HF L N F + F +L+ D CI+
Sbjct: 349 FQSPRLVLFLIHFILFQNSFEIAYFFFILFQFGWDSCIM 387
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 24.2 bits (50), Expect(2) = 3.3
Identities = 7/23 (30%), Positives = 15/23 (65%)
Frame = +1
Query: 256 DTIIVASASQDTYIRLWRIQKVK 324
D+ +AS S+D+ + +W ++ K
Sbjct: 454 DSSFIASGSEDSQVYIWNLKNTK 476
Score = 22.6 bits (46), Expect(2) = 3.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 382 NLWSVKLEAVLAGHEA*VYGVQWHP 456
NL + K VL+GH V V W+P
Sbjct: 471 NLKNTKPLEVLSGHSMTVNCVSWNP 495
>At3g26200.1 68416.m03269 cytochrome P450 71B22, putative (CYP71B22)
Identical to cytochrome P450 71B22
(SP:Q9LTM1)[Arabidopsis thaliana];contains Pfam profile:
PF00067 cytochrome P450
Length = 500
Score = 27.9 bits (59), Expect = 4.9
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +3
Query: 138 FVHWMTTKYIYSLVRTITERILW---LDTKTGLGDLTCWKLIRHNYRSVGFSRY 290
F+H+ + R E +L L+T T LT KL +NY+ +GF++Y
Sbjct: 64 FLHFGVVPVVVVSTREAAEEVLKTHDLETCTR-PKLTATKLFSYNYKDIGFAQY 116
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/50 (22%), Positives = 27/50 (54%)
Frame = +1
Query: 268 VASASQDTYIRLWRIQKVKAQPESKLIKVEEKVFHAYDNLWSVKLEAVLA 417
V SAS+D+++ +W+ + ++P V ++Y++ S + A ++
Sbjct: 704 VVSASEDSHVYIWKYESPASRPSRSNNNKNVTVTNSYEHFHSQDVSAAIS 753
>At1g44180.1 68414.m05103 aminoacylase, putative /
N-acyl-L-amino-acid amidohydrolase, putative similar to
aminoacylase-1 (N-acyl-L-amino-acid amidohydrolase,
ACY-1) [Homo sapiens] SWISS-PROT:Q03154
Length = 435
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -2
Query: 363 FFLNLNQFGLRLGFDLLYPPQTDVCILRSRRYDNCVVSTSNTSSPLTQ 220
F +N+ +G+DL PP D L+ R + S N + L Q
Sbjct: 284 FVMNMQPSEAEVGYDLRLPPMADPVALKKRIAEEWAPSIRNMTYTLKQ 331
>At4g38220.2 68417.m05395 aminoacylase, putative /
N-acyl-L-amino-acid amidohydrolase, putative similar to
aminoacylase-1 (N-acyl-L-amino-acid amidohydrolase,
ACY-1)[Homo sapiens] SWISS-PROT:Q03154
Length = 433
Score = 27.5 bits (58), Expect = 6.4
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = -2
Query: 363 FFLNLNQFGLRLGFDLLYPPQTDVCILRSRRYDNCVVSTSNTSSPLTQ 220
F +NL GFD+ PP D L R + + N S L Q
Sbjct: 277 FVMNLQPSEAEAGFDIRVPPSVDAEALERRLVEEWAPAARNMSFELGQ 324
>At4g29380.1 68417.m04197 protein kinase family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat; contains Pfam PF00069: Protein kinase domain;
contains PF02985: HEAT repeat; similar to adaptor protein
(GI:1817584) [Homo sapiens]; similar to VPS15 protein
(GI:6103009) [Pichia pastoris]
Length = 1494
Score = 27.1 bits (57), Expect = 8.5
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Frame = +2
Query: 2 STDSTIKVWE--RIEGTVTLKQSISLH----SGLCLTLHAQILPCANKPLLLCALDDHKI 163
S DST+KVW+ ++E ++ + ++ H G+C T+ N ++ D I
Sbjct: 1100 SDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRGMCTTM------LRNSTQVVVGASDGVI 1153
Query: 164 HIF 172
H+F
Sbjct: 1154 HMF 1156
>At1g70160.1 68414.m08073 expressed protein similar to hypothetical
protein GI:4455225 from [Arabidopsis thaliana]
Length = 523
Score = 27.1 bits (57), Expect = 8.5
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 58 LEGYRTFYPFPNFN 17
L GY T YP+PN N
Sbjct: 494 LPGYNTIYPYPNMN 507
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,759,293
Number of Sequences: 28952
Number of extensions: 305405
Number of successful extensions: 937
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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