Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021889
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    33   0.050
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2...    26   4.4  
SPAC16E8.03 |gna1|spgna1|glucosamine-phosphate N-acetyltransfera...    25   7.6  

>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 32.7 bits (71), Expect = 0.050
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 578 AGRGTHPRGLTRGPTTSNYANYNLRVSFLLHDVIPSPWK 462
           AG G    G  R P+  N  N N + S  LH ++PSP++
Sbjct: 532 AGEGGLLSGALRAPSQQNNNNSNTQHSINLHTIVPSPYE 570


>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 518

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 470 PWKSIVKFVEYVFH*KNWYRR 408
           PW ++ K V+ +F  +NW+ R
Sbjct: 119 PWDTVPKAVDRIFRSQNWHAR 139


>SPAC16E8.03 |gna1|spgna1|glucosamine-phosphate
           N-acetyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 111

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 368 FRINSETAKLVCDKSNLNFYVNCYPIKSGCSL 273
           F +NS    L C  SN+ FY  C   ++G  +
Sbjct: 71  FSLNSYKVILDCSDSNVGFYEKCGLSRAGIEM 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,717,372
Number of Sequences: 5004
Number of extensions: 55350
Number of successful extensions: 138
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)