Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021889
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0204 + 26354319-26356967                                         30   1.5  
11_02_0027 - 7504076-7504904,7505024-7505219,7505401-7505467           28   7.9  
08_02_0076 + 11967606-11967905,11969125-11969223,11969813-119741...    28   7.9  

>05_06_0204 + 26354319-26356967
          Length = 882

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 374 HIFRINSETAKLVCDKSNLNFYVNCYPIKSGC 279
           H+ +I SE   +V   S +NFYV C  I + C
Sbjct: 598 HLVKIGSEYLDVVVGNSIINFYVKCGCIANAC 629


>11_02_0027 - 7504076-7504904,7505024-7505219,7505401-7505467
          Length = 363

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 507 QIIICVITGGRTSCESARVGTTPCLFLP*SSNAFRFEGWGSRCNYTET 650
           Q ++C++TGG+   +   VG     FL  +  A R +GW  R   T T
Sbjct: 107 QSMMCMVTGGKERLDVEDVGAEYGFFL--APGAKRPDGWAYRFPRTNT 152


>08_02_0076 +
           11967606-11967905,11969125-11969223,11969813-11974124,
           11974177-11974211
          Length = 1581

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 152 WRFLKRSFIKRCL*LLLFTIHDINERVIENETSFTAGNNP 33
           W F ++ F    L ++   IHD+ ++V  +E+    GN P
Sbjct: 569 WGFFEKQFEHSTLLIMHDLIHDLAQKVSSDESFTIEGNEP 608


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,983,252
Number of Sequences: 37544
Number of extensions: 337905
Number of successful extensions: 652
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)