Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021889
         (678 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)            29   3.5  
SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30)                 29   3.5  
SB_3680| Best HMM Match : Keratin_B2 (HMM E-Value=0.0024)              29   3.5  
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)                  29   4.6  
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  

>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
          Length = 677

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 648 SQYSYNGCPTLQTEMHYCFTAEIGRAWYPPART 550
           S+   N C   +T+ ++C T++I   WY P +T
Sbjct: 185 SKTQANWCHPYKTQANWCHTSKIQSNWYHPNKT 217



 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 615 QTEMHYCFTAEIGRAWYPPARTHKRSYH 532
           +T+ + C   +I   WY P++T    YH
Sbjct: 90  ETQAYLCHPTKIQANWYHPSKTQANLYH 117



 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 615 QTEMHYCFTAEIGRAWYPPARTHKRSYH 532
           +T+ + C   +I   WY P++T    YH
Sbjct: 622 ETQAYLCHPTKIQANWYHPSKTQANLYH 649


>SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30)
          Length = 420

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 536 TTSNYANYNLRVSFLLHDVIPSPWKSIVKFVEYVFH*KNWYR 411
           T +NY   +L  + L   VI +PW  ++ FV Y  H + W++
Sbjct: 43  THTNYFIVSLSAADLFVGVISAPWWIVLMFVNY--HSEGWFK 82


>SB_3680| Best HMM Match : Keratin_B2 (HMM E-Value=0.0024)
          Length = 180

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 648 SQYSYNGCPTLQTEMHYCFTAEIGRAWYPPART 550
           S+   N C   +T+ ++C T++I   WY P +T
Sbjct: 30  SKTQANWCHPYKTQANWCHTSKIQSNWYHPNKT 62


>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
          Length = 252

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/52 (38%), Positives = 26/52 (50%)
 Frame = +1

Query: 31  IGLLPAVNDVSFSMTRSLIS*IVNKSSHKHRFIKDLFKNLQTNLASVHIA*N 186
           I ++P     SFS TR L S    K S K    + L KN +TN  S+H+  N
Sbjct: 53  IKIIPFKVSCSFSCTRRL-SVYNTKISAKRLLSQPLKKNKKTNTMSIHVPTN 103


>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 565

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -1

Query: 633 NGCPTLQTEMHYCFTAEIGRAWYPPARTHKRSYH 532
           N C   +T+ + C   +    WY P++T    YH
Sbjct: 445 NWCHPTKTQANLCHPTKTQANWYHPSKTQANWYH 478


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,875,994
Number of Sequences: 59808
Number of extensions: 401305
Number of successful extensions: 930
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)